SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59975

Length: 1374 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59975 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Casein kinase, putative n=2 Tax=rosids RepID=B9SHG2_RICCO	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	kinase family protein	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA41

Fln msg: your sequence is shorter than subject: 351 - 444

Fln protein: VVTLAVTHYQGDNKGFLVCKKKMATSPEMLCCFCPVPFRQFLEAVTNMKFDEEPNYLKLISLFEGILGPNISTRPINTDGAQKVGSKRARLLVDIDDDEQPKKKVRLGTPATQWISVYNARRPMKQRYHYNVADARLHQHVEKGNEDGLYISCVASCTNLWAIIMDAGTGFTSQVYDLSAVFLHKDWIMEQWEKNYYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSPFPSTHVKEKWSKNLYIAAVCYGRTVS*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTACCAGGGTGACAACAAGGGCTTTCTTGTTTGTAAAAAGAAGATGGCAACTTCTCCCGAAATGTTGTGTTGCTTCTGTCCAGTTCCTTTCCGGCAATTTCTTGAAGCAGTCACAAATATGAAATTCGATGAAGAGCCAAATTATCTGAAGCTTATTTCCCTTTTTGAAGGCATTCTTGGACCTAATATTTCAACAAGGCCAATTAATACAGATGGAGCTCAGAAGGTTGGTTCAAAACGAGCAAGGCTACTAGTTGATATTGATGATGATGAGCAACCCAAGAAGAAGGTTCGACTTGGAACTCCAGCAACTCAATGGATATCAGTTTACAATGCTCGACGGCCTATGAAACAGAGATACCACTATAATGTTGCTGATGCACGGCTTCATCAACATGTTGAGAAAGGGAATGAAGATGGGTTGTATATTAGCTGTGTGGCTTCTTGCACAAACCTTTGGGCTATCATTATGGATGCAGGCACAGGGTTCACTTCTCAAGTATACGATCTTTCTGCTGTCTTCCTTCACAAGGATTGGATTATGGAACAGTGGGAAAAGAATTACTATATCAGTGCCATTGCTGGTGCTACGAATGGCAGTTCTTTGGTTGTTATGTCCAAGGGAACACCTTATACTCAGCAATCTTATAAAGTCAGCGATTCCTTTCCTTTCAAATGGATCAGTAAAAAGTGGAAGGAGGGATTTTATGTCACGTCAATGACAACTGCTGGGAGTCGATGGGGTGTGGTTATGTCTCGTAATGCAGGATTCTCAGATCAGGTTGTTGAACTTGATTTTCTCTATCCAAGTGAAGGCATTCATAGACGCTGGGAGAATGGTTATAGAATAACTGCAACTGCTGCAACCTGTGATCAAGCTGCTTTTATTCTGAGTGTGCCAAAGAGGAAACTAACAGATGAAACACAAGAAACACTTCGAACATCACCTTTTCCTAGTACTCATGTTAAGGAGAAATGGTCCAAGAATCTTTATATTGCTGCAGTTTGTTATGGACGCACAGTATCCTGA___TCTTATTTGTTTCATCGGATGCTGTATCTCTTTTGGTAATTTGTGAAGCAATACACTGGGATGTCTATCAAAGGTGCAAAGGTGGACTCTTGAAGTTGAAATTGTGTTTGAGACCCCCCTTTGCTGGTATGTTTGTACATTTGTTGTTCGGATTTGCAGTGTTTTGAAATTTTCCCTAATATGGCAACAACATCTGAAACTTTAAATTGATATGTAGTTACTCTATACATTGGTTAACTGAATATGATATAAAGGGATTGCATTGATGTTTGCACCAAGCGTTTGAGGCATTGATGTAAAAATGTTGTCATCAATTAAAT

Fln Alignment:

sp_v1.1_unigene59975___YQGDNKGFLVCKKKMATSPEMLCCFCPVPFRQFLEAVTNMKFDEEPNYLKLISLFEGILGPNISTRPINTDGAQKVGSKRARLLVDIDDDEQPKKKVRLGTPATQWISVYNARRPMKQRYHYNVADARLHQHVEKGNEDGLYISCVASCTNLWAIIMDAGTGFTSQVYDLSAVFLHKDWIMEQWEKNYYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSPFPSTHVKEKWSKNLYIAAVCYGRTVS
D5AA41_______________YQGDNKGFLVCKKKMSTSPETLCCFCPQPFKQFLEFVINLKFDEEPNYSKLISLFDGIIGPNPAVRPIITDGAQKVGQKRGRLSMGEDDEEQPKKKIRLGIPASQWISVYNARRPMKQRYHYNVADSRLAQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSQSFLHKEWIMEQWEKSYYITAIAGANSGSSLVVMSKGTPYTQQSYKVSDFFPFKWINKKWKEGFYVTSMSTAASRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITATAATWDQAAFILSVPKRKPGDETQETLRTSAFPSTHVKEKWAKNLYLAAVCYGRTVS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1089	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain