SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59962

Length: 1194 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59962 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7T812_VITVI	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proline synthetase associated	-	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP32

Fln msg:

Fln protein: METATSMEGAAALALRTVLRRVQQAAERSGRQASQVRVVAVSKTKPVSLIREVYDAGHRYFGENYVQELLDKAPELPTDIQWHFVGHLQSNKAKAVIAGVPSLYMVESVDSSKVANYLDRAVSSIGRKPLKVLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSKPENFEALSGCRIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAKK*

Protein Length: 246

Fln nts: ATGGGGACGCGACCATGGGGTCTCGGGGTTAAGTGACAAAATAATACCACTTCGTGCATCACTGAACTCTCTGTGGTCGAACTTCGGAAACGACAGTGGTGGGAAGCGCGACCAGACCAACGATCGAGTCGTCTCCACGTCATATAAT_-_ATGGAAACAGCGACGTCAATGGAGGGTGCAGCAGCCCTGGCTCTGCGTACTGTCTTGCGTCGCGTCCAACAAGCTGCTGAAAGATCCGGCAGACAAGCGTCTCAAGTGAGGGTTGTTGCAGTGAGCAAGACGAAACCAGTGTCGCTGATCAGGGAAGTTTATGACGCTGGCCATCGTTACTTCGGGGAAAACTATGTGCAGGAGCTCCTGGACAAGGCGCCAGAGCTTCCCACAGATATCCAGTGGCATTTCGTTGGGCACCTTCAAAGCAACAAGGCAAAGGCTGTTATAGCTGGTGTACCCAGCTTGTATATGGTGGAAAGTGTGGATAGCTCCAAGGTTGCAAACTACCTTGATCGTGCTGTATCAAGTATTGGGAGGAAGCCACTAAAAGTTTTGGTACAAGTCAACACAAGTGGCGAGGAATCAAAATATGGCGTTGAGCCTTCAGAATGTGTGGAACTTGCAAAACATGTCAAGTTTCAGTGCCCTAATTTGGAATTCTCAGGCCTGATGACGATAGGAATGTTGGACTACTCATCTAAACCCGAGAATTTTGAGGCACTGTCAGGTTGCAGAATCGAAGTTTGTAAAGCTCTTGGAATATCAGAGGATCAATGTGAACTGTCAATGGGCATGTCAGGAGACTTCGAACAGGCGATTGAAATGGGAAGCACAAATGTAAGGATTGGTTCTACTATATTTGGAGCAAGAGAGTATCCTGCAAAGAAGTAA___ACTTCACTGAAAACCGTTCTGCAGGAGATTTATTAGGCGATGTTAGTAAATTAATAATAATGAATGAGCAATTCAGCTTAGCGCTTGTCGCATGTAGTATATGCTGTCTTTCAGCAGTTTCTGGAAAAATGGGTGGATACTGGGACCTGGTTTATTAGATATGATATTTTTGACCGAAGAGTTGATTTCAATTTTACTCTGTTGAAAAATGTTAAAAAGTTGGGACTAACTACAACTGGCATTATGTATCTTTTACACAATAATTTCTCAACTGGAATTATGTATCTGTTACACAACAAATTCTCACTATT

Fln Alignment:

sp_v1.1_unigene59962___METATSMEGXXXXXXXXXXXXVQQAAERSGRQASQVRVVAVSKTKPVSLIREVYDAGHRYFGENYVQELLDKAPELPTDIQWHFVGHLQSNKAKAVIAGVPSLYMVESVDSSKVANYLDRAVSSIGRKPLKVLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSKPENFEALSGCRIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAKK
A9NP32_______________METSTAMEGAAALALRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKAPELPTDIQWHFIGHLQSNKAKAVIAGVPNLYMVESVDSSKVANHLDRAVSSIGRKPLKVLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEALSGCRIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAKK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
803	14	85			0.999981
988	9		90		0.999842
1005	4	77	18		1.0
1062	80		10		0.99967
1063			10	90	0.999898
1065	88		11		0.999937
1066			11	88	0.999937
1068	11			88	0.999937
1070	88	11			0.999937
1072			88	11	0.999937
1074			88	11	0.999937
1075		11	88		0.999937
1076	88			11	0.999937
1139	66	33			1.0
1140		33	66		1.0
1141	84	15			0.999986
1142		15	69	15	0.999985
1146		11		88	0.923589
1152	75	25			1.0
1153		25		75	1.0
1154		50	50		1.0
1157		75		25	1.0
1158		33	66		1.0
1160	66			33	1.0
1167	75	25			0.996474
1168		25		75	0.996474
1169		25		75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain