SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59947

Length: 1150 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59947 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphatase n=4 Tax=Solanum lycopersicum RepID=Q8GRL8_SOLLC	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	phosphoethanolamine phosphocholine	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	HAD-superfamily hydrolase, subfamily IB, PSPase-like	IPR006383	-	74%
Blast2go	Pyridoxal phosphate phosphatase-related	IPR006384	-	74%
Blast2go	HAD-like domain	IPR023214	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLR1

Fln msg:

Fln protein: MGCMKGSNTVIVFDFDLTIIDCDSDPWVIEQLGATPLFQALLPTLPWNTLMDKIMGELHDQGKTISDIEESLKTIPLYPETIRAIKFAFSMGCELRIVSDANMFFIKTILQAHDLLQYFTEIKTNPAFVDEKGRLRIQPFHPFTVGPPHGCSLCPPNMCKGAIIDEIMRKSLEGESGEPADKKQFIYLGDGSGDFCPSLKLRDGDHVLPRKEYPLWKLIQKNRDLVKAEVHEWSNAKDVEDLFVKLLEP*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACACAAATCGTCGTGACCTTGGCTGTCACTCAGGTTTTAACTTATTCATTTTCCTTTCTGCCTGCTTGCGAAGCT_-_ATGGGATGCATGAAGGGCAGTAATACTGTGATTGTATTTGATTTCGATCTCACCATAATTGACTGTGATAGCGATCCCTGGGTGATTGAACAGCTCGGAGCCACTCCGCTCTTCCAGGCTTTGCTCCCCACGCTTCCATGGAATACTCTTATGGATAAAATAATGGGGGAGCTGCATGACCAGGGAAAGACGATAAGCGATATTGAAGAGAGTTTGAAGACCATTCCTCTGTACCCAGAAACTATAAGAGCAATCAAATTTGCCTTCTCCATGGGGTGTGAACTTCGAATTGTGAGTGATGCTAATATGTTCTTCATAAAGACCATTCTTCAAGCCCATGACCTGCTCCAATACTTCACTGAGATTAAGACAAATCCAGCATTTGTTGATGAGAAGGGGAGATTGAGGATTCAGCCTTTTCATCCCTTTACTGTAGGCCCTCCTCATGGCTGCAGCCTCTGCCCTCCTAATATGTGCAAGGGAGCAATAATAGATGAGATTATGCGAAAGTCCTTGGAAGGGGAATCAGGAGAACCAGCTGATAAAAAACAATTTATTTATCTTGGGGATGGAAGTGGAGATTTCTGCCCTTCCTTGAAGTTGAGAGATGGAGATCATGTTTTGCCCAGAAAAGAATACCCGCTGTGGAAGCTTATTCAGAAGAACCGTGATCTTGTCAAGGCTGAAGTGCATGAATGGTCTAATGCAAAAGATGTAGAAGATTTGTTTGTCAAGTTACTCGAGCCTTAA___TTATTCTAATCTCTGTCACACAAAACATATATGCTAACCCCATTTTCCTGCTCTGCATGATTACATTGATGATATGTATTGATGGCTCATATTGGTGTCTGGATGCATTGTCCATATATTTTTATAAAATTATATTCAGAAGTTTCGCTGAAAGCTCACTTCAAAGTGTGCCCTTCCAAGAGATGTACATAGATTTATTTGACTTTGAATGTCAAAGATGTTTCAATGTACATAGATTTATTTGACTCTGAAGGTCAAAGTGTTGTTTCAAATTTTTAAAATTTTAATGAAATTTTATATTTTGAC

Fln Alignment:

sp_v1.1_unigene59947___NTVIVFDFDLTIIDCDSDPWVIEQLGATPLFQALLPTLPWNTLMDKIMGELHDQGKTISDIEESLKTIPLYPETIRAIKFAFSMGCELRIVSDANMFFIKTILQAHDLLQYFTEIKTNPAFVDEKGRLRIQPFHPFTVGPPHGCSLCPPNMCKGAIIDEIMRKSLEGESGEPADKKQFIYLGDGSGDFCPSLKLRDGDHVLPRKEYPLWKLIQKNRDLVKAEVHEWSNAKDVEDLFVKLLEP
A9NLR1_______________DTVIMFDFDHTLIDCNSDPWVVNQLGATQLMDSLIKVLPWTSLMDRMMSELHQQGKTVSDIEQSLKTVPICLEMIRAIKSAHSLGCDLRIVSDANSFYIKTILKNYDLLQYFSEIHTNPASVDNDGRLRIFPYHSYTVA-SHGCELCPPNMCKGAIVDGIQR------CFPPESNKRFIYLGDGRGDFCPSLKLGSEDHVLARQEYPLWKLLGQNPDLVKAQVHSWSNAKDVEDCLCKLLMP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
531		10		90	0.999898
797	20		80		0.999996
800	80	20			0.999996
1106	50			50	1.0
1110	50			50	1.0
1116	50	50			1.0
1118	50	50			1.0
1121		42	57		1.0
1122	42			57	1.0
1140	66			33	0.997456
1148			66	33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain