SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59812

Length: 1305 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59812 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 domain containing protein	-	-	3.0e-11	31%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	40%
Blast2go	protein	-	-	1.66614e-22	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family Cys-rich	IPR006461	-	1.66614e-22	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T6C2

Fln msg: your sequence is shorter than subject: 207 - 576

Fln protein: RRDLGCHSILCACGLLYGGFWRIQMRKTFGLPGNGWCCGQPNVTDLMQWLFCSVCSLCQEVRTGNFYEVCDDKLYSKKEYLGQDSQDLRDASPRLAPLSHEPASPAVNSPSQVKLGMPPNLNAQASVSPVLSPMHYSIANSRPPQGFPLVGEGSTFPLSNFFTAETHSAISPASGSEDAHNVAAQTENQRRDVYPMDAPIPQSLER*

Protein Length: 208

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTTGCGCGTGTGGGCTTCTTTACGGTGGGTTTTGGAGGATTCAGATGCGGAAGACGTTTGGCCTACCTGGGAATGGCTGGTGTTGTGGGCAGCCTAATGTGACAGATCTAATGCAGTGGCTTTTCTGCAGTGTTTGTTCTCTCTGTCAGGAGGTTCGCACTGGAAATTTCTATGAAGTCTGTGATGATAAACTCTATTCAAAAAAAGAATACCTTGGCCAAGATTCACAAGACCTAAGAGATGCTTCACCCAGATTGGCTCCGTTGAGTCATGAACCAGCATCACCAGCTGTGAATTCACCCTCTCAGGTCAAATTGGGCATGCCCCCAAATTTGAATGCTCAAGCTTCTGTGTCGCCAGTTTTGAGTCCTATGCATTATTCTATTGCAAACTCTCGTCCTCCACAGGGTTTTCCCCTTGTGGGGGAAGGGTCGACATTCCCTTTGTCTAACTTTTTTACAGCAGAAACTCATAGTGCGATTTCTCCAGCATCAGGATCAGAGGATGCACATAACGTGGCAGCTCAAACAGAAAATCAAAGGAGGGACGTCTATCCAATGGATGCACCCATTCCCCAGAGCCTGGAAAGATAA___GAACAGGGCATTCTAAGCCATTGCTTAACGTAATTCTACTACTATGGTTGACGGCTGGAAGGTTAAATTGAATTTCCCTGGAAACTTGTCCAGTATTAAGATGCATCTAGACATTGTACTTGTTCTGTAGCTTTCTGCAGCGCCCATTGTTGCAGTTTACACTTCAGGAACAACGTCtTCGAgCTTggCaGATCATCCATCaGTCTTTTATGATGTTCCCACGGACTATAAAAATTAGAGATGTGAGATGAGAACAGTCAATAGTTCCTCACTGATGTATATTTGCATGCAAATACCCAAAAACATGAaATTCTAGTTTTTAACTGTGTTGATGCAATTTAATTTTGCTTCTCATCTAAATTGTCTGACTGAATCCTCTGTAGTGAGTAGTAATCTATTTTGGGACAAATTGCATTACCTGAACTGAACCACATCCACATACTAACATGGAATATTGCCCGTGTATGGTTTGCATTTATTTTATGTACAACCAAATTTACATGATTTATAGTTCTATGTACAAAACTGGATAGCTCTTTCCATTTCTTGACGACTGTGCATCCAATACATTGGACTTGGAGCATTGCCGACAAATGAAGAGGAATATCTGATCTACAACATGGGATGGAAAGGTATCTTTCTTATTCTTAACTCAAACACTACCTTTGGGTAAGAAGAGTGGAA

Fln Alignment:

sp_v1.1_unigene59812___ILCACGLLYGGFWRIQMRKTFGLPGNGWCCGQPNVTDLMQWLFCSVCSLCQEVRTGNFYEVCDDKLYSKKEYLGQDSQDLRDASPRLAPLSHE--------PASPAVNSPSQVKLGMPPNLNAQASVSPVLSPMHYSIANSRPPQGFP-LVGEGSTFPLSNFFTAETHSAI
B9T6C2_______________VLCLLGLLYGGFWRIQMRKRFNLPANNACCGKPAMADCTQWLFCCWCSLAQEVRTADFYDIVEKKFCRKEADVNN--------QPALSPLPHDGVIQFRYNPTSSNMNSSRLSKVG--------ADYSP--SPTRFSEDNYTPGKELPKLENEFSTKDADNFMKPPELSSI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
715		75		25	0.996473
739		75		25	0.996473
925		83		16	0.994512
930		80	20		0.995493
931	80	20			0.995493
932		20	80		0.995493
936		80	20		0.995493
938		20		80	0.995493
939	20		80		0.995493
940	80	20			0.995493
944	80		20		0.995493
963		75	25		0.99649
978	33		66		0.997452
997		25		75	0.996473
998		25	75		0.996473
999	25		75		0.996473
1006	33			66	0.997452
1015	66		33		0.997452
1051		33	66		0.997452
1052		33		66	0.997452
1054	33			66	0.997452
1121		66	33		0.997452
1153	66		33		0.997452
1199	33	66			0.997452
1210	66		33		0.997452
1229		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain