SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59770

Length: 1615 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59770

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase 13 n=3 Tax=Pinaceae RepID=C7ENI4_PINTA	-	-	96%
FL-Next	tr=Mitogen activated protein kinase 13; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	protein	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	89%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	89%
Blast2go	MAP kinase, conserved site	IPR003527	-	89%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	89%
Blast2go	Protein kinase-like domain	IPR011009	-	89%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	89%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	89%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C7ENI4

Fln msg:

Fln protein: METSAAAADGHIQGILTHGGRYVQYNIFGNLFEVSSKYVPPIRLIGQGAYGIVCAAVNSETNEEVAIKKIGNSFANRIDAKRTLREIKLLCHMDHENIIAIKDVIRPPQRENFKDVYIVYELMDTDLCQIIHSKQPLSVDHCQYFIYQLLRGLKYIHSANILHRDLKPSNLLLNEDCDLKIGDFGLARTNSDTDSMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGNNYVEQLKLITEFIGSPDDSDLGFLRSDNTRRYIRQLPQVPKQPFAQKFPNMDEDALDLVEKMLVFDPSKRITVEEALSHRYLASLHGINEEPRCPAPFNFDFEQGTFTEEHIKELIWRESLNFNPDMME*

Protein Length: 374

Fln nts: TGGGATTCAAATCCCTTTTGTGATCAGAGCAGTGTTGGATTCCTACCCATTCCTGCTGGGTGCTGCGAAGTAGCAGAAGAAGAAGCAGCTTCTGGAGGAAAGAGAAGCAGAGGGTTTGCGGTTTGTGGATGCAGAAGAAGAAGGCACCGCC_-_ATGGAAACGAGCGCTGCGGCAGCTGACGGTCACATACAGGGAATTCTGACTCATGGTGGTCGGTATGTACAGTATAATATCTTCGGGAACCTCTTCGAGGTTTCCTCCAAGTACGTTCCTCCGATACGACTTATCGGTCAAGGCGCCTATGGCATTGTTTGTGCAGCAGTGAACTCAGAGACAAATGAGGAAGTTGCTATCAAGAAAATTGGCAATTCTTTTGCGAATAGGATTGATGCAAAGAGGACTCTTCGAGAGATTAAGCTTCTATGCCACATGGACCATGAAAATATCATTGCAATTAAAGATGTCATTCGTCCTCCTCAGAGAGAGAATTTTAAAGATGTTTATATTGTATATGAGCTCATGGATACGGATCTCTGCCAGATAATACACTCCAAGCAACCATTATCTGTGGATCACTGTCAGTATTTTATATATCAATTATTGAGAGGGCTCAAGTACATACACTCTGCAAATATTCTGCATAGAGATCTGAAGCCCAGTAATTTGCTTCTAAACGAGGATTGTGACCTAAAAATAGGTGATTTTGGGCTTGCACGGACTAATTCAGACACAGACTCTATGACAGAGTATGTTGTCACTCGCTGGTATCGAGCACCAGAACTACTATTGAATTGTTCAGAGTACACAGCAGCCATTGATATCTGGTCGGTGGGTTGCATTTTCATGGAGATACTAAAGCGGGAGCCCTTGTTTCCTGGTAATAATTATGTCGAGCAACTAAAGCTCATCACTGAGTTTATTGGTTCACCAGATGACTCTGATCTTGGCTTTTTGCGGAGTGATAATACTAGAAGATACATCAGGCAACTCCCACAGGTCCCTAAGCAACCTTTTGCTCAGAAATTTCCTAACATGGACGAAGATGCTCTAGATTTAGTTGAAAAAATGCTTGTATTTGATCCAAGCAAGCGTATCACAGTTGAAGAGGCTTTGAGTCACCGTTACTTAGCAAGTCTGCATGGCATCAATGAAGAACCCAGATGCCCTGCTCCTTTCAATTTTGATTTTGAACAGGGCACCTTCACCGAGGAACACATAAAAGAGCTGATTTGGAGGGAATCTCTTAACTTCAACCCAGACATGATGGAATAG___CTGGAGTAGATGGGCTTGGTATTTATCTATTTGTAATCCTTCTTTGGTGGTTATGTTACTATGCTTATACAGTGCAAATGTTATTATGCTTATACAGTGCAATCCATCTATTGATTTATTATCGGCCTTGTGAAAGTTGGCAGATCATAGTGCAGACATGGGTGGGCTTGTTTTATTCTTATTCTTGTTTTGCTCTTATTCTTTGAAGGTTTGGTAAAGGTAAATAATCGGATGGAGATGTGTACTTTGCATATCCAGACAGAGATTGGAGTTGTGTATTCTAAATCTAGGCCAGCTACTGGGCCTTATGCGATTATTATTATTAAACATTAAAATGTAATAAGT

Fln Alignment:

sp_v1.1_unigene59770___METSAAAADGHIQGILTHGGRYVQYNIFGNLFEVSSKYVPPIRLIGQGAYGIVCAAVNSETNEEVAIKKIGNSFANRIDAKRTLREIKLLCHMDHENIIAIKDVIRPPQRENFKDVYIVYELMDTDLCQIIHSKQPLSVDHCQYFIYQLLRGLKYIHSANILHRDLKPSNLLLNEDCDLKIGDFGLARTNSDTDSMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGNNYVEQLKLITEFIGSPDDSDLGFLRSDNTRRYIRQLPQVPKQPFAQKFPNMDEDALDLVEKMLVFDPSKRITVEEALSHRYLASLHGINEEPRCPAPFNFDFEQGTFTEEHIKELIWRESLNFNPDMME
C7ENI4_______________MEASAAAADGHIQGILTHGGRYVQYNIFGNLFEVSSKYVPPIRLIGQGAYGIVCAAVNSETNEQVAIKKIGNSFANRIDAKRTLREIKLLCHMDHENIIAIKDVIRPPQRENFKDVYIVYELMDTDLCQIIHSKQPLSVDHCQYFIYQLLRGLKYIHSANILHRDLKPGNLFLNEDCDLKIGDFGLARTTSDTDSMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGNNYVEQLKLITEFIGSPDDSDLGFLRSDNTRRYIRQLPQVPKQPFAQKFPNMDEDVVDLLGKMLVFDPSKRITVEEALSHRYLASLHGINEEPGCPIPFNFDFEQGSFTEEHIKELIWRESLSFNPDMMQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1310	10		90		0.90298
1311		10	90		0.90298
1346		20		80	0.999996
1347	80		20		0.999996
1352			20	80	0.999996
1355		20		80	0.999996
1356	80			20	0.999996
1359		80	20		0.999996
1360		20		80	0.999996
1362	77		22		0.999999
1367		22	77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain