SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59769

Length: 654 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59769

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine rich repeat-like protein (Fragment) n=12 Tax=Picea sitchensis RepID=E0Z7S4_PICSI	-	-	1.4013e-45	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	leucine rich repeat-like protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
43			85	14	0.993533
44			14	85	0.993533
45			14	85	0.993533
46	85		14		0.993533
64	12			87	0.992554
66			12	87	0.992554
67	87		12		0.992554
68	87		12		0.992554
89	88		11		0.923564
90			11	88	0.923564
459	85			14	0.993533
461			14	85	0.993533
462		14		85	0.993533
468	85		14		0.993533
469		85		14	0.993533
470	85		14		0.993533
472		14		85	0.993533
475		85	14		0.993533
478	14			85	0.993533
479	85	14			0.993533
482	14			85	0.993533
483			14	85	0.993533
527	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain