SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59718

Length: 399 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene59718
CTCCAGAGGGTTTGCCTGCATTCTCAGCAGGAGAGCCTTGGTCAGTTAAAGTTCCGGGAAATGCTTTCCCTATTGCTGTTGGAGCTACTTGCATGAGTAGTGAAGAAGCATCTAAAGCTAGTTTGCGTGGGAAAGCTTTGCGAATCATTCACTATTATCGAGATACATTATGGGAGTCTGCTGAAGGCCGATCTATACCCAATGGTGGATTCTTGGAAGATGTAGTTCTAGAAGATCCGACATCTATTGCAACTTCTCAGGCAACAGATCCATCTGAATCTGAGGTTGTGGATGCTTCAGATCATTTGCCTGAGGGTAATGGTGATGACAGTGAAGTAGATGTGCAACACGGAAACAAGTTTGATTCTAGACATGATGCTGCAAAGCAGTTAGGTGTTG

Ace file of the UniGene sp_v1.1_unigene59718

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	eukaryotic translation initiation factor SUI1 family protein	-	-	9.0e-31	53%
FL-Next	tr=At1g71350; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	eukaryotic translation initiation factor sui1 family protein	-	-	1.85368e-31	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PUA-like domain	IPR015947	-	1.85368e-31	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8L629

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 132 - 290

Fln protein: PEGLPAFSAGEPWSVKVPGNAFPIAVGATCMSSEEASKASLRGKALRIIHYYRDTLWESAEGRSIPNGGFLEDVVLEDPTSIATSQATDPSESEVVDASDHLPEGNGDDSEVDVQHGNKFDSRHDAAKQLGV

Protein Length: 133

Fln nts: CTCCAGAGGGTTTGCCTGCATTCTCAGCAGGAGAGCCTTGGTCAGTTAAAGTTCCGGGAAATGCTTTCCCTATTGCTGTTGGAGCTACTTGCATGAGTAGTGAAGAAGCATCTAAAGCTAGTTTGCGTGGGAAAGCTTTGCGAATCATTCACTATTATCGAGATACATTATGGGAGTCTGCTGAAGGCCGATCTATACCCAATGGTGGATTCTTGGAAGATGTAGTTCTAGAAGATCCGACATCTATTGCAACTTCTCAGGCAACAGATCCATCTGAATCTGAGGTTGTGGATGCTTCAGATCATTTGCCTGAGGGTAATGGTGATGACAGTGAAGTAGATGTGCAACACGGAAACAAGTTTGATTCTAGACATGATGCTGCAAAGCAGTTAGGTGTTG

Fln Alignment:

sp_v1.1_unigene59718___PEGLPAFSAGEPWSVKVPGNAFPIAVGATCMSSEEASKASLRGKALRIIHYYRDTLWESAEGRSIPNGGFLEDVVLEDPTSIATSQATDPSESEVVDASDHLPEGNGDDSEVDVQHGNKFDSRHDA
Q8L629_______________PQGYPSFSAGEIWAVKVPGNLAPIAVGCTTMSSEEARKAGLRGKALRITHYYRDFLWESAEGHYVPNAGFMEDVVMEDPSYLAPGSGEDILDTSASTGNEE------DESALETASTSAADAKNDA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
320		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain