SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59647

Length: 1202 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59647

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ubiquitin-conjugating enzyme spm2	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	92%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	92%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
111	25			75	0.996473
118		25		75	0.996473
120	75		25		0.996473
127		75		25	0.996473
529		16	83		0.994512
531	83			16	0.994512
532	83	16			0.994512
534			83	16	0.994512
535		83	16		0.994512
538	83	16			0.994512
542			16	83	0.994512
543			16	83	0.994512
547		11	88		0.923564
548			88	11	0.923564
549	77	11		11	0.968132
550	88	11			0.923564
551		11	88		0.923564
553		11	11	77	0.968132
554	22		77		0.999999
555		11		88	0.923564
559	88		11		0.923564
560			11	88	0.923564
561	88	11			0.923564
565	11			88	0.923564
569	11			88	0.923564
854		25		75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain