SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59646

Length: 1024 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase 6 n=3 Tax=Arabidopsis RepID=KCS6_ARATH	-	-	62%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	at1g68530 t26j14_10	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	81%
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	81%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	81%
Blast2go	cuticle development	GO:0042335	Biological Process	81%
Blast2go	response to light stimulus	GO:0009416	Biological Process	81%
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	fatty acid elongase activity	GO:0009922	Molecular Function	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 976 and 951, Distance to subject end: 189 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 298 - 530

Fln protein: MGEEEGSGNRGLPDFLLTVKLKYVKLGYQYLTKYFLSFLLVPLLVGVGLEVGRIGVDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSxxNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAICxxxxxxxxxxxKYRLVHAVRTHKGAD

Protein Length: 299

Fln nts: ATGGGGGCCAAGTTAGAGCGACTTTGATGCCAGGATTGATGAATTGGGTATCTGTATCTGCTTCTGGTTCTGCATTGTCTTAGTTGCAATTTAGTTTTTGCTTCAGTTTTTGTATTTATTGTTGTTTGAGCA_-_ATGGGTGAAGAAGAAGGGTCTGGTAATCGTGGCCTGCCTGATTTTCTCCTCACTGTGAAGTTGAAATACGTGAAGCTTGGATACCAGTATCTGACTAAATATTTTCTGTCTTTCCTGCTGGTTCCGTTGCTGGTTGGAGTGGGCTTGGAGGTTGGAAGAATTGGGGTGGACGATGTAGTTTTGCTATGGCAAGCTCTGGAGTTCAATCTTGTTCATGCATTGTCATGTACAGGGCTTCTGGTTTTTGTATCGACTGTGTATATAATGTCGAGGCCTCGTGCGGTGTATTTGGTGGACTATTCCTGTTACCGTCCCCCAGATTCATGCAGAGTTCCTTTTGCAACTTTCATGGAGCATTCCAGGCTGTTCAAGTATTTTGACCAGAAAAGCCTGGATTTTCAGATGAAGATTCTGGAAAGGTCTGGTCTTAGTGAAGAGACTTGCCTCCCCCCTGCTCTGCATTACATTCCCCCTAGTCCCACAATGTCGGCTTCCCGCGACGAGGCCCAGCTCGTCATATTTTCTGCCATGGACGATCTGTTCTCCAAAACGGGACTCAAGCCCAAGGACATTGATATTCTTGTTGTGAATTGCAGTCTTTTCTGCCCGACCCCGTCGxxxxxxAATTTATCTGGCATGGGCTGCAGCGCGGGGGTCATAGCAGTGGATCTGGCGAACAATCTTCTGCAAGTCCATGGGAATTCGAATGCTATTGTGGTGAGCACCGAGACCATTACGCCGAATTGGTACCGCGGGAACCAGCGATCCATGCTGCTCCCAAATTGCTTGTTCCGAATGGGCGGCGCCGCCATTTGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGAAGTACAGGCTCGTCCATGCGGTCAGAACTCACAAAGGCGCAGACGA

Fln Alignment:

sp_v1.1_unigene59646___RGLPDFLLTVKLKYVKLGYQYLTKYFLS-FXXXXXXXXXXXXXXXXXXDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSLxxxxxxxxxxxxxxxxFNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAICYPxxxxxxxxAKYRLVHAVRTHKGAD
A9NVH1_______________RRLPDFLQSVNLKYVKLGYHYLISHAVYLFSVPVLLLAFSAEIGSLSQQDLWRLWEQPHFDLTTMLTFSGATVFMLCLYFMSQPRSVYLVDFACFKPSDELKVSKEEFISLAKKSGHFDDASLEFQKRILERSGVGDETYLPKAVMGPGLCSTMKEGRAEAEMVMFGALDELFEKCKVRPKDVGILVVNCSLFNPTPSLxxxxxxxxxxxxxxxxFNLGGMGCSAGIISLDLARDMLQAHPNSYAIVVSTEMITFNWYTGAERSMLMPNCFFRMGGAAILLSxxxxxxxxAKYSLSHIVRTHKGAD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
453		85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain