SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59636

Length: 741 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59636

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=2 Tax=Picea sitchensis RepID=C0PSV4_PICSI	-	-	96%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aspartate transaminase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	92%
Blast2go	Cysteine and methionine metabolism	00270	92%
Blast2go	Arginine and proline metabolism	00330	92%
Blast2go	Tyrosine metabolism	00350	92%
Blast2go	Phenylalanine metabolism	00360	92%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	92%
Blast2go	Carbon fixation in photosynthetic organisms	00710	92%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	92%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	92%
Blast2go	Biosynthesis of phenylpropanoids	01061	92%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	92%
Blast2go	Biosynthesis of plant hormones	01070	92%
Blast2go	Metabolic pathways	01100	92%
Blast2go	Biosynthesis of secondary metabolites	01110	92%

Source	GOs	Term	Type	Identity
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	92%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Aspartate/other aminotransferase	IPR000796	-	92%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	92%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	92%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	92%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
235	88		11		0.991528
236	88			11	0.991528
242		87		12	0.992554
243		87	12		0.992554
244		87	12		0.992554
248			12	87	0.992554
256		12	87		0.992554
257	12	87			0.992554
391		87	12		0.992554
393		12	87		0.992554
396	87			12	0.992554
406	87			12	0.992554
428			11	88	0.991528
436		11		88	0.991528
454			88	11	0.991528
455	88	11			0.991528
456	88		11		0.991528
459	88		11		0.991528
460	88			11	0.991528
465		88	11		0.991528
470		11		88	0.991528
471		11		88	0.991528
500		14		85	0.993533
524	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain