SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59628

Length: 674 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59628

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-splicing factor prp45; K06063 SNW domain-containing protein 1	-	-	55%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	59%
Blast2go	chromatin protein family	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	response to mannitol stimulus	GO:0010555	Biological Process	70%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	70%
Blast2go	response to salt stress	GO:0009651	Biological Process	70%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	70%
Blast2go	nucleolus	GO:0005730	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SKI-interacting protein, SKIP	IPR017862	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121		33		66	0.997452
126		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain