SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59614

Length: 2101 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene59614
ATGGGGTGGGCATCCGTGGTGAGGATAAACTCCGAGAATAATATTCTCTCTATGCAAGCCTCCTGATAGCTAGGCGTTTGCTTATACTTTGTTTATCTTCAAGAAAGTATACATCCCTAGTCCTTGCTTCAAATTTCCAACAAGATGGCATCCAAGCCTGGGCCTCTTACGCCATGGCCATGGGCAAAACTTGGCAACTTCAAGCTATGGATAAGCATTTCTCGTTATCAGAATGCAATAAGCAAGCGCCAGATTCAATCCAAAAGTATCGAGTTTGAGCAGGTTGATCGAGAGGGAACCTGGGACGATTATATTATTTTCTATGCTGTGTTGCTTTTCCTCGCTCATGCCGTCATTCCAGGAGTTTCGAATCTTCCTCTGTGGAATACGAAGGTCTTATTGTGACAAGTTTGGCTCACTCGGGCCTGTCGAATTCACCTATTACTGGGCACATAGAGCTCTGCATCATCATTTTCTGTATAGCCGGTACCATTCGCATCACCACTCTTCTTTTGTGACGGAACCAATTACATCTGTGGTGCATCCATTTGCAGAACATATTTTGTATGCAGCGATCTTTTCCATGGCTGAACTACCTCTAGCTATCACCAATACTAATTCCATTGGTGTTCTGTTTGGGTACCATTTATGGTTCGATTTAATGAACAATATGGGGCACTGCAACTTCGAGTTTCTCCCCCAGTTTGCATTTAAGATTTTCCCCTTTCTGAAATACTTCATGTACACACCCTCATTTCATTCTCTTCATCATTCTCAAGTGCATACCAACTTCAGTCTCTTCATGCCAATTTACGACTATCTTTACGGAACAGTCGACAAATCTTCGGATACTCTCTACGAGGCTGCAAGTGAAGGGCGCAAAGAGAGCGTTGATTTCATATACCTAACGCATTTAACAAACCTGCTGTCGGTTTTTCATTTGCGTTTCGGTTTTGCCTCATTTGCGGCAAAGCCATACTCTTCCAAATGGTATATAAGGATGTTGTGGCCTATAAGCAACGCAGTCATGCTGGTCTTATCGACTTTTGGAAGAACATTCACCTCCGAAAAGAATCGGCTAGATCGATTGCATATGCAGACATGGGTGATTCCACGATACACTTTTCAGTATTTTCTACCTTCTGAGAAACCAAGGATTAACCAGCTCATTGAAGATTCCATATTGGACGCGGAGAAGAAAGGAGCGAAAGTTATAAGTCTGGGCCTTCTCAACCAGAATGAAGACTTGAACCGAAGTGGAAAACAGTTCGTCAAGCAACACGAGAATCTCAGAATTCGAATTGCTGATGGTAGTACTTTGGCAGCGGCTTTTATTTTGAATTCAATTCCAGAGAAGGAAACGTCCGAGGTGCTTATTATTTCTGGGGGAGCATGCAAGTTGGAATCGGGTATAGCAAGAGTGCTATGTGAGCGTGGGGTTAGGGTCCAGCTTCTGGTGGACTCAGAAGAACAAATCGAGAAATCAAAGATGAAAGTCCCTCGCGAATTTAGACATAATCTCTTCCACGTCGCAAGCTACCAGTCATGCATTACCTGCAAGATATGGATTGTAGGCAGATGGCTTAGTCGAGGTGATCAGATGAAGGCACCCGAGGGCACTCGTTTTATTCCGCTTCTTCCCTTTCCGATACCGAATGTTCGTGACGACTGCACTTACGAGACCGTTCCTTCAATGAGTGTGCCCAAAAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGCGCATGGCGAGTTGGAGGAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATTTGATGATGTCATTGACAGCGACACCGTTACTCGAGTATGGGAAGCTGCCATCAAACATGGTTTTCATCCTTTCAATTCGATCAAAGCAAATTAATGATGTTTACGTAGATGGAGAGTCCTAATAAATTCCTCACTTCTGAGATATTGAGGTTTCAGACTGGTTTTAAAGAAAATAGTAGTTTTTATTGCTGGTACTACAATTTCAGTCAGTTAAATAGGTAGTCAGTGAGTTATATAGGTAGTTTTAATGACTGTACTCTCATTAGTAAGTATTAGCCTGATG

Ace file of the UniGene sp_v1.1_unigene59614

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Arabidopsis thaliana gl1 homolog n=4 Tax=Arabidopsis thaliana RepID=O22681_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	cer1 protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	68%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	68%
Blast2go	anther development	GO:0048653	Biological Process	68%
Blast2go	exine	GO:0043668	Cellular Component	68%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD47

Fln msg: your sequence is longer than subject: 530 - 228

Fln protein: MLCCFSSLMPSFQEFRIFLCGIRRSYCDKFGSLGPVEFTYYWAHRALHHHFLYSRYHSHHHSSFVTEPITSVVHPFAEHILYAAIFSMAELPLAITNTNSIGVLFGYHLWFDLMNNMGHCNFEFLPQFAFKIFPFLKYFMYTPSFHSLHHSQVHTNFSLFMPIYDYLYGTVDKSSDTLYEAASEGRKESVDFIYLTHLTNLLSVFHLRFGFASFAAKPYSSKWYIRMLWPISNAVMLVLSTFGRTFTSEKNRLDRLHMQTWVIPRYTFQYFLPSEKPRINQLIEDSILDAEKKGAKVISLGLLNQNEDLNRSGKQFVKQHENLRIRIADGSTLAAAFILNSIPEKETSEVLIISGGACKLESGIARVLCERGVRVQLLVDSEEQIEKSKMKVPREFRHNLFHVASYQSCITCKIWIVGRWLSRGDQMKAPEGTRFIPLLPFPIPNVRDDCTYETVPSMSVPKNLENLHACENGLPRRVLSAWRVGGIVHALEDWNHHEFDDVIDSDTVTRVWEAAIKHGFHPFNSIKAN*

Protein Length: 531

Fln nts: ATGGGGTGGGCATCCGTGGTGAGGATAAACTCCGAGAATAATATTCTCTCTATGCAAGCCTCCTGATAGCTAGGCGTTTGCTTATACTTTGTTTATCTTCAAGAAAGTATACATCCCTAGTCCTTGCTTCAAATTTCCAACAAGATGGCATCCAAGCCTGGGCCTCTTACGCCATGGCCATGGGCAAAACTTGGCAACTTCAAGCTATGGATAAGCATTTCTCGTTATCAGAATGCAATAAGCAAGCGCCAGATTCAATCCAAAAGTATCGAGTTTGAGCAGGTTGATCGAGAGGGAACCTGGGACGATTATATTATTTTCT_-_ATGCTGTGTTGCTTTTCCTCGCTCATGCCGTCATTCCAGGAGTTTCGAATCTTCCTCTGTGGAATACGAAGGTCTTATTGTGACAAGTTTGGCTCACTCGGGCCTGTCGAATTCACCTATTACTGGGCACATAGAGCTCTGCATCATCATTTTCTGTATAGCCGGTACCATTCGCATCACCACTCTTCTTTTGTGACGGAACCAATTACATCTGTGGTGCATCCATTTGCAGAACATATTTTGTATGCAGCGATCTTTTCCATGGCTGAACTACCTCTAGCTATCACCAATACTAATTCCATTGGTGTTCTGTTTGGGTACCATTTATGGTTCGATTTAATGAACAATATGGGGCACTGCAACTTCGAGTTTCTCCCCCAGTTTGCATTTAAGATTTTCCCCTTTCTGAAATACTTCATGTACACACCCTCATTTCATTCTCTTCATCATTCTCAAGTGCATACCAACTTCAGTCTCTTCATGCCAATTTACGACTATCTTTACGGAACAGTCGACAAATCTTCGGATACTCTCTACGAGGCTGCAAGTGAAGGGCGCAAAGAGAGCGTTGATTTCATATACCTAACGCATTTAACAAACCTGCTGTCGGTTTTTCATTTGCGTTTCGGTTTTGCCTCATTTGCGGCAAAGCCATACTCTTCCAAATGGTATATAAGGATGTTGTGGCCTATAAGCAACGCAGTCATGCTGGTCTTATCGACTTTTGGAAGAACATTCACCTCCGAAAAGAATCGGCTAGATCGATTGCATATGCAGACATGGGTGATTCCACGATACACTTTTCAGTATTTTCTACCTTCTGAGAAACCAAGGATTAACCAGCTCATTGAAGATTCCATATTGGACGCGGAGAAGAAAGGAGCGAAAGTTATAAGTCTGGGCCTTCTCAACCAGAATGAAGACTTGAACCGAAGTGGAAAACAGTTCGTCAAGCAACACGAGAATCTCAGAATTCGAATTGCTGATGGTAGTACTTTGGCAGCGGCTTTTATTTTGAATTCAATTCCAGAGAAGGAAACGTCCGAGGTGCTTATTATTTCTGGGGGAGCATGCAAGTTGGAATCGGGTATAGCAAGAGTGCTATGTGAGCGTGGGGTTAGGGTCCAGCTTCTGGTGGACTCAGAAGAACAAATCGAGAAATCAAAGATGAAAGTCCCTCGCGAATTTAGACATAATCTCTTCCACGTCGCAAGCTACCAGTCATGCATTACCTGCAAGATATGGATTGTAGGCAGATGGCTTAGTCGAGGTGATCAGATGAAGGCACCCGAGGGCACTCGTTTTATTCCGCTTCTTCCCTTTCCGATACCGAATGTTCGTGACGACTGCACTTACGAGACCGTTCCTTCAATGAGTGTGCCCAAAAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGCGCATGGCGAGTTGGAGGAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATTTGATGATGTCATTGACAGCGACACCGTTACTCGAGTATGGGAAGCTGCCATCAAACATGGTTTTCATCCTTTCAATTCGATCAAAGCAAATTAA___TGATGTTTACGTAGATGGAGAGTCCTAATAAATTCCTCACTTCTGAGATATTGAGGTTTCAGACTGGTTTTAAAGAAAATAGTAGTTTTTATTGCTGGTACTACAATTTCAGTCAGTTAAATAGGTAGTCAGTGAGTTATATAGGTAGTTTTAATGACTGTACTCTCATTAGTAAGTATTAGCCTGATG

Fln Alignment:

sp_v1.1_unigene59614___NEDLNRSGKQFVKQHENLR---IRIADGSTLAAAFILNSIPEKETSEVLIISGGACKLESGIARVLCERGVRVQLLVDSEEQIEKSKMKVPREFRHNLFHVASYQSCITCKIWIVGRWLSRGDQMKAPEGTRFIPLLPFPIPNVRDDCTYETVPSMSVPKNLENLHACENGLPRRVLSAWRVGGIVHALEDWNHHEFDDVIDSDTVTRVWEAAIKHGFHPFNSIKAN
D5AD47_______________NEDLNDSEKPFLKRHENLRHLRVRIVDGSTLAAAFVLNSIREKETSEVLLILGGASKVGSGITRVLCERGIRVQLLVDSEEQFQKSKMGVPWEFTHNLFQVTSYQSCINCKTWIVGSWLTREDQMKAPKGTRFIPFLPFPIPNVREDCTYQTVPAMSVPKNLENLHACENGLPRRVMSAWRVGGIVHALEEWNHHECDDVIDSASVTRVWDAATKHGFLPFNSIKGD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1105			66	33	0.997452
1430	10	90			0.90298
1433	90		10		0.90298
1434			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain