SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59612

Length: 873 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59612

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Sorghum bicolor RepID=C5XAE7_SORBI	-	-	9.0e-14	28%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	protein	-	-	1.6774e-13	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	1.6774e-13	50%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.6774e-13	50%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	1.6774e-13	50%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
339	25	75			1.0
345	62		37		1.0
364	87		12		0.992554
446			76	23	1.0
472		15	84		0.999986
501	80	13	6		0.999961
533		90	9		0.999872
559	90		10		0.999898
638			90	10	0.999898
660		14	80	4	1.0
715	78		21		1.0
716			21	78	1.0
734	90		10		0.903503
735		90		10	0.90298
738		70		30	1.0
748		11		88	0.923564
760	25	75			1.0
768	20			80	0.995493
771	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain