SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59605

Length: 858 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59605

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SCF ubiquitin ligase n=4 Tax=Picea RepID=Q3ZDI8_PICAB	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	SKP1 component	IPR001232	-	88%
Blast2go	BTB/POZ fold	IPR011333	-	88%
Blast2go	SKP1 component, dimerisation	IPR016072	-	88%
Blast2go	SKP1 component, POZ	IPR016073	-	88%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
30	83	10	6		1.0
31		3	6	50	1.0
32		13	40	46	1.0
34	3		83	13	1.0
35	3	13	83		1.0
36	53			3	1.0
38	6	13	33	46	1.0
39	83	3		10	1.0
41		86	10	3	1.0
46		86	6		0.994799
48	86	6	6		0.994799
49	6			93	0.999364
51	6			93	0.999364
53	93			6	0.999364
54		6		93	0.999364
126		3		90	0.997544
224			2	90	0.999997
322		96	3		0.987242
325	96			3	0.987242
326			96	3	0.987242
421	93		6		0.999998
498	85		4		0.999726
508	87	12			0.992554
511	87	12			0.992554
512	87		12		0.992554
513	87			12	0.992554
515		87	12		0.992554
520			87	12	0.992554
523			12	87	0.992554
531		14	85		0.993533
720		33		66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain