SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59600

Length: 728 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59600

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S20, putative; K02969 small subunit ribosomal protein S20e	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	40s ribosomal protein s20	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	cell wall	GO:0005618	Cellular Component	93%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S10	IPR001848	-	93%
Blast2go	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	93%
Blast2go	Ribosomal protein S10, conserved site	IPR018268	-	93%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
94	50	50			1.0
97			50	50	1.0
98			50	50	1.0
99			50	50	1.0
116	20			80	0.995498
117		80		20	0.995498
119		80	20		0.995494
120			20	80	0.995494
122		80	20		0.995494
133	71			14	0.984337
134		71	28		1.0
136		71	28		1.0
137		71	28		1.0
139			28	71	1.0
182		25		75	1.0
683		69		30	1.0
740		80		20	0.995498

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain