SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59587

Length: 1538 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59587

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase nepenthesin-1 precursor, putative	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	56%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase A1	IPR001461	-	56%
Blast2go	Peptidase aspartic, catalytic	IPR009007	-	56%
Blast2go	Peptidase aspartic	IPR021109	-	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg:

Fln protein: MPVSTSLDYCCSMARLGILGVMLIATIASCALQFNVNCSGRNEAQENNKNFRIDLIRRDSGIPSNAERLLRAIARSKQRLQRLQHYISQNSGLGSKSYYSPISAADGEFVMQIGIGYPVPVTMHAILDTGSDLIWTQCQPCDDYCIPQSDPMYNPAQSSTYKNVSCSSYFCLAVGEHRCDGGANCIYYYQYGDSSHTAGVLAYETFSLATAALRARTYIPQIAFGCGHDQGGFFDDSAGIVGLGRGPLSLVSQIGSSIDNVFSYCLGSIENKAQRSPLFLGRAGIFSSDFNVTSLILNNPFPTFYYLGLAGINVGGEPVQFPGDTFKIQPDGGGGLIIDSGTTLTFFVDPAYTPFIAAVRSAIEAQAVDSTQLGFDLCYNSTSDLRLPSITFNFVGGAEYVLPPENSFISNQEDTGGLVCLAFASSGPAGSISIFGNIQQQNFHIVYDLGRNNLYFTPTACDSM*

Protein Length: 466

Fln nts: CGTACCGTTCTTGTCC_-_ATGCCTGTCTCTACTTCTCTGGACTATTGTTGCAGCATGGCGAGACTCGGCATTTTGGGCGTTATGCTAATCGCCACGATCGCTTCATGTGCTCTGCAATTTAATGTAAATTGCTCAGGGCGCAACGAAGCACAGGAGAATAACAAAAATTTCAGAATAGATCTCATTCGTCGAGACTCCGGGATCCCCTCAAACGCTGAACGACTGCTGCGAGCAATTGCACGAAGCAAGCAGAGGTTGCAGAGGCTGCAACACTATATTTCCCAAAATTCTGGCCTCGGCTCCAAGAGTTATTACAGTCCCATTAGCGCCGCTGATGGCGAATTTGTAATGCAGATTGGAATTGGGTACCCAGTTCCAGTAACCATGCATGCAATACTCGACACAGGCAGCGATTTGATCTGGACCCAGTGCCAACCCTGCGACGATTACTGTATTCCACAGAGTGACCCAATGTATAATCCCGCGCAGTCATCGACTTACAAGAATGTTTCGTGCTCCAGCTATTTTTGCTTGGCCGTAGGGGAGCACAGGTGCGATGGCGGCGCAAATTGCATTTATTATTACCAGTACGGAGACTCTTCCCACACTGCTGGAGTTTTGGCTTACGAAACGTTCAGTCTGGCAACAGCAGCTCTGCGCGCGCGGACCTATATTCCGCAGATTGCATTTGGTTGCGGCCATGACCAAGGCGGTTTTTTCGACGATTCAGCCGGTATAGTGGGTCTGGGCCGAGGGCCTCTGTCACTGGTTTCGCAGATTGGATCTTCCATTGACAACGTTTTCTCCTATTGTTTAGGATCCATAGAAAATAAGGCACAGCGAAGCCCTTTGTTCTTGGGTAGAGCTGGTATCTTTAGTTCAGATTTTAATGTCACTTCTCTGATTCTAAACAATCCTTTTCCGACTTTTTACTATCTGGGCCTCGCTGGAATCAATGTGGGAGGCGAACCAGTCCAGTTTCCGGGTGATACCTTCAAAATTCAGCCCGATGGAGGTGGAGGACTTATAATTGATTCTGGAACGACTCTAACGTTTTTTGTGGATCCGGCATACACACCCTTTATTGCTGCTGTGCGGTCCGCCATTGAAGCTCAGGCAGTTGATTCAACTCAACTAGGTTTCGATCTCTGTTACAATTCTACGTCTGATCTCCGACTTCCTAGTATTACTTTCAACTTTGTAGGTGGGGCAGAGTATGTTTTGCCGCCAGAGAATTCGTTCATATCAAATCAGGAAGATACTGGTGGGTTGGTTTGTCTTGCGTTCGCATCTTCAGGTCCCGCAGGTTCGATATCGATATTTGGAAACATTCAGCAGCAGAATTTCCACATCGTCTACGATCTCGGCCGCAACAATCTTTACTTTACTCCAACTGCCTGTGATTCTATGTAA___TACCACTCCAATACTCCAACTACCTGTGATTCTACGTAATACCACTCTTCCATTAGATTCACCTATTACTTTATGTTTCATAAATGTTAAAATTATACTGTTAAAATAATTTATAATTAATATTATT

Fln Alignment:

sp_v1.1_unigene59587___RIDLIRRDS-------GIPSNAERLLRAIARSKQRLQRLQHYISQNSGLGSKSYYSPISAADGEFVMQIGIGYPVPVTMHAILDTGSDLIWTQCQPCDDYCIPQSDPMYNPAQSSTYKNVSCSSYFCLAVGEHRCDGGANCIYYYQYGDSSHTAGVLAYETFSLATAALRARTYIPQIAFGCGHD-QGGFFDDSAGIVGLGRGPLSLVSQIGSSIDNVFSYCLGSI-ENKAQRSPLFLGR-AGIFSSDFNVTSLILNNPFPTFYYLGLAGINVGGEPVQFPGDTFKIQPDGGGGLIIDSGTTLTFFVDPAYTPFIAAVRSAIEAQAVDSTQLGFDLCY---NSTSDLRLPSITFNFVGGAEYVLPPENSFISNQEDTGGLVCLAFASSGPAGSISIFGNIQQQNFHIVYDLGRNNLYFTPTACDSM
A9NXW9_______________RIDLVRTDSPLSPFSPGNISSTERFKRAIKRSQDRLEKLQMSVDE-----VKAVEAPVYAGNGEFLMKMAIGTP-SLSFSAILDTGSDLTWTQCKPCTD-CYPQPTPIYDPSQSSTYSKVPCSSSMCQALPMYSCSG-ANCEYLYSYGDQSSTQGILSYESFTLTSQSL------PHIAFGCGQENEGGGFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNAKTVSSTPLVQSRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHF-EGADFNLPKENYIYT---DSSGIACLAML---PSNGMSIFGNIQQQNYQILYDNERNVLSFAPTVCDTL

SNPs (tot: 5)

Position	A %	C %	T %	Probability
1444		88	11	0.999937
1445	88		11	0.999952
1446	82	11	5	0.999919
1447		11	88	0.999952
1449		87	12	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain