SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59572

Length: 604 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59572

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P-type ATPase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q94IM8_HORVU	-	-	85%
FL-Next	sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	endoplasmic reticulum	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	92%
Blast2go	Manganese-transporting ATPase.	EC:3.6.3.35	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	92%
Blast2go	manganese ion transport	GO:0006828	Biological Process	92%
Blast2go	manganese ion homeostasis	GO:0055071	Biological Process	92%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	92%
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	manganese-transporting ATPase activity	GO:0015410	Molecular Function	92%
Blast2go	endomembrane system	GO:0012505	Cellular Component	92%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	0.0	92%
Blast2go	ATPase, cation-transporting, domain N	IPR023306	-	0.0	92%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
279		25		75	0.996473
281	75			25	0.996473
282		25		75	0.996473
285	25	75			0.996473
286		25		75	0.996473
293	75		25		0.996473
295	75	25			0.996473
296	25	75			0.996473
306			25	75	0.996473
307			25	75	0.996473
311	66			33	0.997452
312	66		33		0.997452
313			66	33	0.997452
314	66			33	0.997452
316			33	66	0.997452
318		66		33	0.997452
319		33		66	0.997452
320	25		75		0.996481
323	75		25		0.996481
324		75		25	0.996481
325	75			25	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain