SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59547

Length: 1122 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59547

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L6 n=3 Tax=Picea sitchensis RepID=A9NLS7_PICSI	-	-	90%
FL-Next	sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	60s ribosomal protein l6	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L6E	IPR000915	-	86%
Blast2go	Ribosomal protein L6, N-terminal	IPR005568	-	86%
Blast2go	Translation protein SH3-like, subgroup	IPR014722	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLS7

Fln msg:

Fln protein: MAKSGQPKVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQPPQPKAVEKAPKFYPAEDVPKPLINKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELVF*

Protein Length: 233

Fln nts: ATGGGGAGGGGTCTTTTGTCGAGAACGGAGCAGCTTGGGGAGAGATCGCAGCTGGGGGAGAGACGCAGGAAGAGGAACTGAAGAGGAAGAGAG_-_ATGGCGAAGTCCGGGCAGCCCAAGGTTTCAAGAAACAAAGACCTTATAAGAGGAGTTGGCCGTTTTTCCAGATCGAAAATGTATCACAAGAGAGGTATTTGGGCCATCAAGGAGAAGAACGGGGGCAGCTTCCCACGGCACGATAAACAACCCCCACAGCCGAAGGCTGTAGAAAAGGCTCCTAAATTTTATCCTGCGGAGGACGTGCCCAAGCCCCTCATTAACAAGAGGAAACCTAAGCCCACCAAGCTCAGGTCCAGCATTACTCCTGGAACTGTTCTGATCCTTCTGGCTGGACGCTTCAAAGGGAAGCGTGTTGTCTTCCTAAAGCAGCTGGAGTCTGGTCTTTTGCTTATTACTGGCCCCTTTAAATTGAATGGTGTTCCAATCAGAAGGGTAAATCAAGCATATGTCATTGCAACCTCCACCAAGATTGATATAAGCACTGTTGATGTGAACAAATTCACAGACAAGTACTTTGCAAAGGAGGTTATTAGGAAGAAGAAGACCGAGAGTGAATTTTTTGAGGCAGAGAAAGAGGATAAAAAGTCCTTGCCTGTGGAGAAAAAGGAGGATCAGAAAGTTCTGGATTCTGTATTGTTGCAGATTCTAGAATCTGTTCCAGATTTGAAGCAGTATTTGTCTGCAAGATTTAGTTTGAGGTCAGGAATGAAGCCACATGAGCTTGTTTTCTGA___AAGATGAGCACAACTGCAGAGATTAGTTTTCCATGATTGCAACCTTTGTTAATGAGTTCAGAATTTTTAATATAAGCCTTTCTCTAAGTAAGGTTTGAAATGTTTTGCATAAACCTTATGCCGTCGTTTTTGGTATCCATATTCGGAAATTATTAAATTTTAGTAAAACAATGTATCACTTGGCCCCTGTGGGTAGGCCTGGTAAAATATATGGTTTATATTAGTTGATGTCGGCTATGAAAATGTGACAGCAACTAACGCCTTTGCAAAAGCGGGATAAACAAAGAAACTAAATCTGTTTTCTGGATGAGTTTAATAAAATTATGAAAGGAC

Fln Alignment:

sp_v1.1_unigene59547___MAKSGQPKVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQPPQPKAVEKAPKFYPAEDVPKPLINKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELVF
A9NLS7_______________MAKSEKPRVSRNKELIRGVGRFSRSKMYHKRGIWALKEKNGGSFPRHDKQPPQAKAVEKAPKFYPADDEPKPLINKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLVTGPFKLNGVPIRRVNQAYVIATSTKIDISTVDASKFTDKYFEKEVVRKKKTESEFFEAEKEDKKTLPTEKKEDQKVLDAVVLQAVESVPDLNQYLSSRFSLRSGMKPHELVF

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
256	33	66			0.997452
461		75	25		0.996473
462		75		25	0.996473
464			25	75	0.996473
466			25	75	0.996473
468	75	25			0.996473
469	75	25			0.996473
473	75		25		0.996473
474	75	25			0.996473
479		25	75		0.996473
480	25			75	0.996473
481		25		75	0.996473
482		75		25	0.996473
646	66	33			0.997476
652			33	66	0.997476
653	33		66		0.997476
662	66			33	0.997476
665	66	33			0.997457
667	66	33			0.997464
668	66			33	0.997464
669	66	33			0.997464
670	33		66		0.997476
763	40		40	20	1.0
789		25		75	0.996473
865	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain