SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59508

Length: 1259 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59508

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinase C1A n=1 Tax=Dactylis glomerata RepID=D0VEB8_DACGL	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	cysteine proteinase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	75%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg:

Fln protein: MASVSKATLLLFLATTLWTLSANASDSSPGFTDEDLKSEESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGTYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSKHLPVSIDWRKKGAVNPVKNQGQCGSCWAFSTIASVEGINYLKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGVVAEDEYPYTAEASECSPSKVKSNAIAATIDGFEDVPANNEKALKEAVGHQPVSVAIEASGKDFQFYSKGVFTGECGTELDHGVVAVGYGKSPEGINYWIVRNSWGPEWGEEGYIKMQRDIEAVEGKCGIAMQASYPTKKTQDIDIELDVDHISDEL*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTGGGTCCAAATTCTCATTATTTCTCTCTGTGAATTTTGTTGTTATTTCGTC_-_ATGGCGAGTGTTTCAAAGGCAACCCTGTTACTCTTCCTTGCGACCACCTTGTGGACTTTATCAGCCAACGCTTCGGATTCTTCCCCTGGATTTACAGATGAAGACCTCAAGTCTGAAGAAAGTCTGCGACTCCTTTATGATAAATGGGCACTTCGGCATCGCACCACCAGAAGTTTGGATTCGGATGAGCATGCCAAACGATTCGAGATATTCAAAGATAATGTGAAATACATCGACTCCGTGAATCAGAAGGATGGTACATACAAGCTTGGATTGAATAAATTTGCAGATCTGAGTAACGAAGAATTCAAGGCCATGCACATGACAACTAGAATGGAGAAGCACAAGAGTCTGCGTCGAGACAGAGGAACACAGAGTGGATCATTCATGTACCAAAACTCCAAGCACCTGCCAGTGTCTATTGATTGGAGGAAGAAAGGAGCAGTTAATCCTGTGAAGAACCAAGGCCAATGTGGAAGTTGTTGGGCATTTTCAACTATAGCTTCTGTAGAGGGCATTAACTATCTCAAAACAGGGAAGCTGGTTTCTTTATCAGAGCAACAGTTGGTAGATTGTAGTAAAGAGAACGCAGGATGCAACGGAGGGCTTATGGACAACGCCTTCCAATATATCATAGATAATGGTGGGGTCGTTGCTGAAGATGAGTATCCATACACTGCTGAAGCCAGCGAATGCAGTCCCTCCAAGGTTAAATCGAATGCAATAGCAGCAACTATTGATGGTTTTGAAGATGTTCCTGCTAACAATGAAAAAGCTCTCAAAGAAGCAGTGGGTCACCAACCTGTGTCTGTGGCCATTGAAGCAAGTGGTAAAGATTTCCAATTTTATTCAAAGGGAGTATTCACTGGTGAATGCGGCACTGAACTTGACCATGGAGTTGTAGCGGTTGGTTATGGCAAGTCTCCTGAGGGAATTAATTATTGGATAGTTAGGAACTCTTGGGGACCTGAATGGGGAGAAGAAGGGTATATAAAAATGCAACGAGATATTGAAGCAGTAGAAGGGAAGTGTGGTATTGCCATGCAAGCTTCATATCCTACCAAGAAAACACAAGACATTGATATTGAATTGGATGTTGATCACATTAGTGATGAATTGTAA___AAAATGTGTCAACAAAAGATTGGTATTGTGAAATTCAATAATATGAAGATTCCTTCTTCATTTATTAAC

Fln Alignment:

sp_v1.1_unigene59508___MASVSKAXXXXXXXXXXXXXSANASDSSPGFTDEDLKSEESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGTYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSKHLPVSIDWRKKGAVNPVKNQGQCGSCWAFSTIASVEGINYLKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGVVAEDEYPYTAEASECSPSKVKSNAIAATIDGFEDVPANNEKALKEAVGHQPVSVAIEASGKDFQFYSKGVFTGECGTELDHGVVAVGYGKSPEGINYWIVRNSWGPEWGEEGYIKMQRDIEAVEGKCGIAMQASYPTKKTQDIDIELDVDHISDEL
B8LMA7_______________MASVSKAALLLFLAALWTL-SANALDSSPGFTDEELESDESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQNSKRLPASIDWRKKGAVTPVKNQGQCGSCWAFSTIASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDFQFYSTGVFTGKCGTELDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEQGYIRMQRGIEATEGKCGISMQASYPTKKTQDVDIELDVDHISDEL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
958	90		10		0.90298
1100			87	12	0.999964
1251		85		14	0.993533
1255	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain