SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59498

Length: 1226 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59498 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L7, putative; K02937 large subunit ribosomal protein L7e	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ribosomal protein l7	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	vacuole	GO:0005773	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L7, eukaryotic	IPR005998	-	91%
Blast2go	Ribosomal protein L30, N-terminal	IPR012988	-	91%
Blast2go	Ribosomal protein L30, ferredoxin-like fold domain	IPR016082	-	91%
Blast2go	Ribosomal protein L30, conserved site	IPR018038	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J6

Fln msg:

Fln protein: MGEEEAKAIAVVPESVLKKRKRNEEWEKNKKEQLDAAKSKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN*

Protein Length: 248

Fln nts: GCCAAACATGCTTCGTCGTGACCTTGGCTGTCACTCATTGGTTTCTCTTTTCTTTAGCTGCTTTCGCCAGGTTACGGTGGCCTCCAGACGCTCTGTGACATAGTTGGCTCCAGGTCGAGGTTGTTCACTTCGTCACCTGTCTCTGGCAGCGACACGCCCAGAAAAAGAT_-_ATGGGTGAAGAAGAGGCAAAGGCAATTGCTGTAGTGCCAGAATCTGTGTTGAAGAAGAGGAAAAGAAATGAAGAATGGGAGAAGAATAAAAAGGAGCAGTTAGATGCTGCAAAATCAAAAAGAGCTCAAAACCGTAAGCTTATATTCAAGAGGGCTGAGAAATATATCAAGGAGTACAGGGACCAGGAGCGGGATCTCATCAGACTGAAGCGAGAAGCCAAACTGAGTGGAGGTTTCTATGTTGATCCAGAAGCCAAGCTGCTTTTCATTATTCGCATCCGTGGTATTAATGATATGCATCCAAAGACACGGAAGATCTTACAGCTATTGCGTTTGAGGCAGATCTTCAATGGCGTCTTCCTGAAAGTGAACAAAGCAACTGTGAATATGTTGCAGAGGGTTGAACCATATGTGACTTATGGCTATCCTAATTTGAAGAGTATTAGAGAGCTGATTTACAAAAGAGGTTATGGAAAGGTTAACAAGCAGAGGATTCCTCTGACAGACAACGCTGTTATTGAACAGGTTTTGGGTCAGTATGGAATCATCTGTATTGAAGATCTCATTCATGAGATAATTACTGTTGGTCCTAATTTCACAAAGGCAAACAACTTTTTATGGCCATTTAAGCTCAGTGCTCCATCTGGTGGGTTGAAGAAGAAAAGGAACCACTATATTGAGGGTGGAGATGCTGGAAATCGTGAGCTTAAAATTAATGAGATGATTAGGAGGATGAATTAG___TAACATGATTATACTGTTATTTAGCAAAGTTAATTCTAGGTGCCTTTTTAGCATTTGGTCAATCTGTAAAGAGTTGCTTTACGGTTTTAGCATCAAACATCAAAAGGGGTATTCTTAACAATTTTTGGGAGGTAATTATATAGTTTGAGCTGTTCCACGGCGTAGATTTTCAAATACCTTTTGTTAGACACTGAACGTATAGCTAAATAATTTGATTCATATTATTGTGCTTTATATTTTTCAATTAAACGTAAAAATAATACAAATTGACATTGTATTATTTTTTTTTCCATTTTGAAATAATGATAAAACGTTT

Fln Alignment:

sp_v1.1_unigene59498___MGEEEAKAIAVVPESVLXXXXXXXXXXXXXXEQLDAAKSKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKXXXXXXXXXIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGXXXXXXXXXXXITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN
A9P1J6_______________MGEEEAKAVAVVPESVLKKRKRNEEWEKNKKEQLDAAKLKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKRDAKLRGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINELIRRMN

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
100	66		33		0.997452
881		3		96	0.993037
915		96	3		0.993591
1092		3	1	94	0.947029
1093		3		96	0.991164
1095	5			94	0.999996
1133	89	8			1.0
1177	92			2	0.990091
1178		5	92	2	0.990091
1179		5	94		0.997984
1182	94	5			0.997984
1183		94		5	0.997984
1187		5		94	0.998744
1189	94			5	0.998894
1206		16		83	1.0
1209	64	28			1.0
1210	64	35			1.0
1211	71	21		7	1.0
1212		23	53	23	1.0
1213	70	30			1.0
1215	77			22	0.999999
1216	87			12	0.992556
1221	71	28			1.0
1222	71	28			1.0
1226	66	33			1.0
1231		25	75		0.996473
1232		25		75	0.996473
1234	75		25		0.996473
1235	25	75			0.996473
1242			80	20	0.995505
1247		80	20		0.995505
1250	20	80			0.995505
1251			80	20	0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain