SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59497

Length: 1582 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59497 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-galactosidase (EC:3.2.1.22)	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	alpha-galactosidase alpha-n-	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, clan GH-D	IPR000111	-	77%
Blast2go	Glycoside hydrolase, family 27	IPR002241	-	77%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	77%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	77%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg:

Fln protein: MASISLVLFLTALVLLSTVACSFGDASSVDGIARRPPMGIAGRPPMGWNSWNKFGCDINEKVIKETADALISTGFSELGYKYVNLDDCWAEYQRDKNGRLVANATTFPSGIKALADYVHSKGLKLGIYSDAGFFTCSKRQPGSLGHEEIDAKTFADWGVDFLKYDNCYTDGSKPELRYPKMRDALLKTRRPIFYSLCEWGVDDPSTWGKKVGNSWRTTPDINNTWTSILNRADLNSKWAEYAGPGGWNDPDMLEVGNSNATTDEYRAHFSLWALMKAPLLIGCDVRSMTLETVKILTNAEVIAVNQDRLGIQGKKVYKHGDLEVWAGPLSDNRIVVILFNRMKSRAAITAKWEDVGLNPSEEVQVRNLWKHKNLRNRRGSLTSSVKPHASKMFIFTRIQK*

Protein Length: 402

Fln nts: ATGGGGTTCCAGAAAC_-_ATGGCGTCTATCTCGCTTGTTCTCTTCTTGACCGCGCTTGTTCTCTTATCGACCGTGGCTTGCTCCTTCGGTGATGCAAGTTCGGTTGATGGAATCGCTAGAAGACCTCCCATGGGAATCGCCGGGAGACCTCCCATGGGGTGGAACTCTTGGAATAAATTTGGTTGCGATATCAACGAGAAAGTAATCAAGGAAACTGCTGATGCGCTGATCTCAACAGGTTTTAGTGAACTGGGCTATAAATACGTTAATTTAGATGATTGCTGGGCTGAGTACCAGCGAGATAAAAATGGAAGATTAGTAGCAAATGCTACAACATTCCCATCGGGTATCAAAGCCCTTGCTGACTATGTACACAGCAAAGGTCTCAAACTCGGGATATATTCAGATGCAGGCTTTTTTACCTGCTCAAAAAGACAACCAGGTTCTTTGGGACATGAGGAAATTGATGCAAAGACATTTGCGGACTGGGGCGTGGATTTTCTTAAGTACGATAATTGCTATACTGATGGCAGCAAACCCGAACTCCGGTACCCAAAGATGAGAGATGCGCTTTTGAAAACAAGGCGCCCAATATTTTACTCACTGTGTGAATGGGGAGTAGATGATCCTTCTACTTGGGGAAAAAAAGTTGGAAACAGTTGGAGAACAACACCAGATATTAACAACACTTGGACTAGCATACTTAACAGAGCAGATCTGAACAGTAAATGGGCAGAGTATGCAGGACCAGGTGGATGGAATGATCCGGACATGTTGGAAGTTGGCAACAGCAATGCAACTACAGATGAGTACAGGGCCCATTTCAGCTTATGGGCCCTGATGAAGGCACCATTGTTGATAGGTTGTGACGTGAGGTCGATGACCCTGGAGACCGTGAAGATTTTGACCAATGCAGAGGTGATTGCTGTCAATCAAGATAGATTGGGAATACAAGGTAAAAAGGTCTACAAACACGGCGATCTAGAGGTGTGGGCAGGCCCTCTATCAGATAATCGTATCGTGGTAATTCTGTTCAACAGAATGAAATCGAGAGCTGCAATTACAGCCAAATGGGAAGACGTTGGCCTGAATCCTTCTGAGGAAGTCCAAGTTAGAAACTTATGGAAGCATAAAAATCTGAGGAACCGTAGAGGCAGCCTAACATCATCGGTGAAACCGCACGCGTCGAAAATGTTCATTTTCACTAGAATTCAGAAGTAG___ATCTCTATGAAGGTGGATCCCTGGTTTTTAAACCCAAATTGTTAGATGAATATTTATTACTATTCAGTGAATAAGTTGGCAAAAAAATCCATTTGGTCTATGGTCAAATGGTTTAAGCCTCAAAATAAGGACGTCATTCTTCAAGCGATGTTAAAAATATGTTTATTTAGTAATAACAGTTGTGTTCTCCCTTTTATTACCAGAAGAGTCTTCCCGTATGTTCAATGGATGAGATTTTAGTGGaTGTTCCCATATGTTCAATGaATGAGATTTCTGTGGATGTTTCATGGATGAAATTTGGATAATTTTTTTGATTGTGGAGATATTTTATAAATTCAATAATTTTGATATTAAAACACGCAT

Fln Alignment:

sp_v1.1_unigene59497___GIAGRPPMGWNSWNKFGCDINEKVIKETADALISTGFSELGYKYVNLDDCWAEYQRDKNGRLVANATTFPSGIKALADYVHSKGLKLGIYSDAGFFTCSKRQPGSLGHEEIDAKTFADWGVDFLKYDNCYTDGSKPELRYPKMRDALLKTRRPIFYSLCEWGVDDPSTWGKKVGNSWRTTPDINNTWTSILNRADLNSKWAEYAGPGGWNDPDMLEVGNSNATTDEYRAHFSLWALMKAPLLIGCDVRSMTLETVKILTNAEVIAVNQDRLGIQGKKVYKHGDLEVWAGPLSDNRIVVILFNRMKSRAAITAKWEDVGLNPSEEVQVRNLWKHKNLR-NRRGSLTSSVKPHASKMFIFTRI
A9NWJ8_______________GLAQTPPLGWNSWNHFGCHINEDVIRETADALVSTGLSKLGYQYVNIDDCWAELNRDSNGRLVASASRFPSGIKALADYVHSKGLKLGIYSDAGYYTCQK-QPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPENRYPKMRDALLSTRRPIFYSLCEWGLDVPATWARQIGSSWRTTDDIEDKWESMISRADQNNEFAQYAGPGGWNDPDMLEVGNGNMTPEEYGSHFSIWALMKAPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGKKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKWEDIGLNPSAVVRVRNLWRHRELEANHQGSLTASVKPHGCKMYVLTSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain