SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59473

Length: 489 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene59473
CGTCGTGACCTTGGCTGTCACTCATTGTCCAGGAAATCTTTGAGGAGGGGTCAGCAATGCTCGCTGAAAGGCTGGGCTCRGAATATACGGTGCAGACAGTATCAGGATTGTTYGCTTGTGCTGTCTGTCAAACTGACATCACACCTAGYGAGGGYATTTCTGTGCATGCTGGATCYTTTTTTTCAGGAAATATGCGCGCTCTTGGGAAGGCCCCTTTCTATGTKCAAGCTGTAAATTGAAGAAAGATGCAATGGAAGGCAAGCGATCATCAAGAGTGACAGCAACATAAATATCATTCGGGTTAGGCTGAATGCACGTCCTATGACCATCTCATGTGATCTCAACTTCCAGACTTTGGAGGCACAGTTCTGGTTTTGTTGTAAATTGGTTGAGTATAAACTAATGCACTCCATTCCACATGACTTTCAATGGAGATGGTAGTGATGAGAAAAAAGATAATTTGCTAAAACAATTGGGCTATTATTAATA

Ace file of the UniGene sp_v1.1_unigene59473

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein phosphatase, putative (EC:3.1.3.16)	-	-	6.0e-22	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	6.07614e-36	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	6.07614e-36	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF8

Fln msg: Overlapping hits, possible frame ERROR between 200 and 179, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 96 - 436

Fln protein: S*PWLSLIVQEIFEEGSAMLAERLGSEYTVQTVSGLFACAVCQTDITPSEGISVHAGSxxxxxxxxxWEGPFLCSSCKLKKDAMEGKRSSRVTAT*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTCCAGGAAATCTTTGAGGAGGGGTCAGCAATGCTCGCTGAAAGGCTGGGCTCgGAATATACGGTGCAGACAGTATCAGGATTGTTtGCTTGTGCTGTCTGTCAAACTGACATCACACCTAGcGAGGGtATTTCTGTGCATGCTGGATCcxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGGAAGGCCCCTTTCTATGTtCAAGCTGTAAATTGAAGAAAGATGCAATGGAAGGCAAGCGATCATCAAGAGTGACAGCAACATAAATATCATTCGGGTTAGGCTGAATGCACGTCCTATGACCATCTCATGTGATCTCAACTTCCAGACTTTGGAGGCACAGTTCTGGTTTTGTTGTAAATTGGTTGAGTATAAACTAATGCACTCCATTCCACATGACTTTCAATGGAGATGGTAGTGATGAGAAAAAAGATAATTTGCTAAAACAATTGGGCTATTATTAATA

Fln Alignment:

sp_v1.1_unigene59473___IVQEIFEEGSAMLAERLGSEYTVQTVSGLFACAVCQTDITPSEGISVHAGSxxxxxxxxWEGPFLCSSCKLKKDAMEGKRSSRVTAT
B8LLF8_______________IVQEIFEEGSAMLAERLGSEYAVHTVSGLFACAVCQTDITPSEGISVHAGSxxxxxxxxWEGPFLCASCKLKKDAMEGKRSSRTTAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain