SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59464

Length: 488 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene59464
ATGGGGCCTTCCCTCAGCATTTCAACAAATGTGTCTTTGGATGGGTTTAACACCTCCGAAATACTTTCAGAGACAAGCAAATCCGTTGCTAAGATCATTGGCAAGCCAGAAGCTTTGTGATGTTGGCCGTCGTGACCTTGGCTGTCACTCAATTTGGGGGTACGGAGGAACCAGCAGCGTATGGGGAATTGGTGTCCATTGGAGGGTTGGGGTCTGATACCAACAAGAAGCTCAGCTCAGCCATTGCCAACATACTGGAGAACAAGCTCACTGTACCCAAGTCACGCTTCTACATCAAGTTCTACGATGTCAAGAGGTCGGATTTTGGATGGAATGGCACCACATTTTGATGTGGCATATCTTTAGATGCAAGCTACACCTTTGTGGAGCTCAACTTGCAAATTGCAAATAATATCTTGCTGTTGGGACATTACATATTTGTAATAGATGTTATGAACTAGGTTGTTGTAGTCACAAAACTGTCTTTG

Ace file of the UniGene sp_v1.1_unigene59464

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Light-inducible protein ATLS1 n=2 Tax=Magnoliophyta RepID=B3TLP2_ELAGV	-	-	1.0e-33	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	light-inducible protein atls1	-	-	5.64051e-41	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	5.64051e-41	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Macrophage migration inhibitory factor	IPR001398	-	5.64051e-41	81%
Blast2go	Tautomerase	IPR014347	-	5.64051e-41	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTC0

Fln msg: Overlapping hits, possible frame ERROR between 114 and 111,

Fln protein: MGPSLSISTNVSLDGFNTSEILSETSKSVAKIIGKPxxxVMLAVVTLAVTQFGGTEEPAAYGELVSIGGLGSDTNKKLSSAIANILENKLTVPKSRFYIKFYDVKRSDFGWNGTTF*

Protein Length: 118

Fln nts: _-_ATGGGGCCTTCCCTCAGCATTTCAACAAATGTGTCTTTGGATGGGTTTAACACCTCCGAAATACTTTCAGAGACAAGCAAATCCGTTGCTAAGATCATTGGCAAGCCAxxxxxxxxxGTGATGTTGGCCGTCGTGACCTTGGCTGTCACTCAATTTGGGGGTACGGAGGAACCAGCAGCGTATGGGGAATTGGTGTCCATTGGAGGGTTGGGGTCTGATACCAACAAGAAGCTCAGCTCAGCCATTGCCAACATACTGGAGAACAAGCTCACTGTACCCAAGTCACGCTTCTACATCAAGTTCTACGATGTCAAGAGGTCGGATTTTGGATGGAATGGCACCACATTTTGA___TGTGGCATATCTTTAGATGCAAGCTACACCTTTGTGGAGCTCAACTTGCAAATTGCAAATAATATCTTGCTGTTGGGACATTACATATTTGTAATAGATGTTATGAACTAGGTTGTTGTAGTCACAAAACTGTCTTTG

Fln Alignment:

sp_v1.1_unigene59464___PSLSISTNVSLDGFNTSEILSETSKSVAKIIGKPExFVMLAVVTLAVTQFGGTEEPAAYGELVSIGGLGSDTNKKLSSAIANILENKLTVPKSRFYIKFYDVKRSDFGWNGTTF
A9NTC0_______________PSLNISTNVPLEGLNTSEILSETSKSVAKIIGKPExYVMVQLKGSVAISFGGTEEPAAYGELVSIGGLGSDTNKKLSAAIATILDTKLKVPKSRFYIKFYDVKRSDFGWNGTTF

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
131		66		33	1.0
134	20	80			0.995493
135	33		66		1.0
136	16	16		66	0.988857
137			80	20	0.995493
138	66	16	16		0.98887
140	16	66	16		0.98887
142		40		60	1.0
145		60		40	1.0
146	40			60	1.0
148		40		60	1.0
149	40	60			1.0
151		60		40	1.0
153		60		40	1.0
154	66	33			1.0
168			85	14	0.993534
169	85	14			0.993534
171			85	14	0.993534
172	85		14		0.993534
177			83	16	0.994512
178		83		16	0.994512
179	83		16		0.994512
185	83	16			0.994512
186	16			83	0.994512
187		14	85		0.993541
188			85	14	0.993541
189		14	85		0.993541
190	14		85		0.993538
201		87	12		0.992554
205		12		87	0.992554
206			87	12	0.992554
207			87	12	0.992554
208	87	12			0.992554
209			87	12	0.992556
210			87	12	0.992556
216			87	12	0.992556
217	12		87		0.99256
220	12			87	0.992555
223		12		87	0.992554
224	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain