SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59445

Length: 1073 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59445

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNase PD2 (Fragment) n=1 Tax=Prunus dulcis RepID=Q9LLS1_PRUDU	-	-	53%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	ribonuclease	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	69%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	69%
Blast2go	response to wounding	GO:0009611	Biological Process	69%
Blast2go	aging	GO:0007568	Biological Process	69%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	69%
Blast2go	ribonuclease activity	GO:0004540	Molecular Function	69%
Blast2go	extracellular region	GO:0005576	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease T2	IPR001568	-	0.0	69%
Blast2go	Ribonuclease T2, active site	IPR018188	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P42813

Fln msg:

Fln protein: MKTTNAGSIMLVLIIFGCCSTGVIATSFDFYYFVQQWPGSYCDTRRGCCYPRTGRPASEFSIHGLWPNYNTGKWPQFCGSSEEFDYSKISDLEEELNRYWGSLSCPSSDGQEFWGHEWEKHGTCSLNLDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPFGDDQEDRRGYTEEIEEL*

Protein Length: 247

Fln nts: ATTCATGATATAAGATCAGATTCATATGGTATgcaGGgAGCCATAGAAAtgacgAgCAAAGTTACTAGCAGGAAATCAAACTAGGTATC_-_ATGAAGACCACCAACGCAGGCTCGATAATGTTGGTGCTCATTATTTTTGGGTGcTGTTCCACTGGGGTCATAGCTACATCTTTTGATTTCTATTACTTCGTTCAACAGTGGCCTGGTTCATACTGCGATACTCGTAGAGGATGCTGTTACCCTCGCACGGGAAGGCCTGCTTCCGAATTTTCCATTCATGGCCTCTGGCCCAACTAtAACACCGGTAAATGGCCACAGTTCTGTGGTTCCTCCGAAGAATTCGACTACTCAAAGATCTCAGATCTGGAGGAGGAGCTGAACAGGTATTGGGGTTCGTTAAGCTGTCCGAGCAGCGATGGACAGGAATTCTGGGGACACGAGTGGGAGAAACATGGCACTTGCTCTCTCAATCTTGATGAGCATTCATACTTTGAGAAGGCTCTCTCCCTGAGACAAAATATAGACATTCTTGGGGCTCTTAAAACTGCAGGTATTAAACCCGATGGAAACCAATACAGTTTGAGCGATATCAAGGAAGCCATTAAGCAAAACACTGGGCAGCTCCCAGGAATCGATTGCAACATAAGCGCAGAGGGAGAACATCAACTATATCAGGTGTATGTGTGTGTGGATAAATCCGATGCTTCCACTGTTATTGAATGCCCCATTTACCCACACAGCAATTGCCCATCCATGGTTGTGTTTCCTCCTTTTGGGGACGATCAGGAGGACCGACGTGGTTACACAGAAGAAATAGAGGAGCTGTAG___ATCTGGAAAAACAGCATTTCTTCTCTCCGCATTTGATTCGTATCAATGAAATTGCCGATTCCAACTTGACATTTTGTAGATTTGATAGCTTCTTAGATTGCAAGGCATGTTTTGAACGATTCAATTCGTAACGcTGTATTTCATTATTTAAACTTTAACGTCGGGGGACCAAGTTTGCTGAAAACGTAAAATGAGAAAACTATTTGCCACTTGCTGAATTATTTTATGATATAGACATGTTAAAGC

Fln Alignment:

sp_v1.1_unigene59445___IMLVLIIFGCCSTGVIATSFDFYYFVQQWPGSYCDTRRGCCYPRTGRPASEFSIHGLWPNYNTGKWPQFCGSSEEFDYSKISDLEEELNRYWGSLSCPSSDGQEFWGHEWEKHGTCSLN-LDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPF
P42813_______________ISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRS-GSGLIECPVFPHGKCGAEIEFPSF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
480	33		66		0.997452
683	22		77		0.999999
813	72		27		1.0
843	20		80		0.999999
868		66		33	1.0
873		88		11	0.991528
883			77	22	0.999999
963	25	25		50	0.995533
992	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain