SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59423

Length: 1402 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59423

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-soluble NSF attachment protein n=2 Tax=Elaeis guineensis RepID=B3TM19_ELAGV	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	alpha-soluble nsf attachment protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	NSF attachment protein	IPR000744	-	85%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	85%
Blast2go	Tetratricopeptide repeat	IPR019734	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0M8

Fln msg: Overlapping hits, possible frame ERROR between 452 and 446,

Fln protein: MAEQEAKGSEFERKADKKIEGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCxxxxNSQEAVQCLNLAVNLFLEIGRLSMAAKHCKEIGDLYESEENFELAMQYFERAADLFRGEEVTSTANRCDLAVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNALDKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDDLT*

Protein Length: 291

Fln nts: TGTTGGTAAGGTAAGTTCGATCTTGGTGCCAAATTGCAAGACTTTTCTGGGAAAGAGAGAATATAAAGAATTTCACTTCAAACTGCTACTTATGCTACATAATTGTAGAGAATTTCGCCTCAACAACTCTACATAATTGCAGGACCAAGGAGGTCAAACAGAACTTATTGCAGCTTGTTTAAGACAAAATAAGTCAT_-_ATGGCAGAACAAGAAGCCAAGGGATCCGAGTTTGAGAGGAAAGCAGACAAAAAGATAGAAGGATGGTCGATTTTTGGTTCTAAATATGATGATGCTGCGGAGTTATATGAGAAGGCTGGCAATTCCTACAAGCTTGCAAAATCTTGGGACAAAGCTGGATCAACATACATCAAGCTAGCAAATTGTCATTTAAAGCTGGAAAGTAAGCATGAGGGAGCATCAGCATATGTGGATGCAGCTAACTGCxxxxxxxxxxxxAACAGCCAAGAGGCTGTGCAATGCTTAAATTTGGCTGTTAATCTCTTTCTGGAGATAGGAAGATTGTCAATGGCTGCAAAGCATTGCAAGGAGATTGGCGACCTATATGAGTCGGAAGAAAATTTCGAATTGGCTATGCAATATTTTGAGCGTGCTGCAGACCTCTTTCGAGGTGAAGAAGTTACTAGTACAGCTAACCGTTGTGACCTTGCTGTTGCTCAGTTTGCGGCCCAGCTTGAACAATACCCAAAGGCCATCCAAATTTTTGAAGAAGTAGCACAGCAGTCAATCAATAATAATCTTCTCAAGTACAGCGTTAAGGGTTATCTTCTAAATGCTGGTCTTTGCCATATTTGCAAGGGTGATGTTGTGGCAATAAACAATGCACTTGATAAATATCAGGAACTTGATCCAACATTTTCGGGTACCAGAGAGTGCAAATTCCTAGCAGATTTGGCTAATGCAATTGACGAGGAGGATGTGGTGAACTTTACTGATGTTGTCAAGGAGTTTGATAGTATGACTAGACTGGATCAATGGAAAACATCCCTCTTGCTTCGTGCAAAGAACACTTTGAAAGCTAAGGAGGTTGAGGAGGATGATCTTACATAG___GTTACTCTAGTAACCTGGGTGTATTATTACTGGCTGCGTATATTTTCTTTTGCAGGAAGGATGGTTGTCATCAGGATAGACTGATGTTTGATTCACCTGAAAGTTTGAGACCGCCCATCTTTGATTTATGGATAGAGGTTGCTTCCTTGCCATTTACATAAAATTGGGACTAAAGGTGTTGCTTCCTTACCATTTACATAAAATTGGGACTAAAGGTGTTGCTTCCTTACCATTTACATAAAATCGGGACTAAAGGACTTTGTATCCGGGTAGCTTTAAACAGGAGGTTTGCTGACATGTTGGTGTTCTATATTTGAATATTCATTCTCAAAACTT

Fln Alignment:

sp_v1.1_unigene59423___MAEQEAKGSEFERKADKKIEGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCYxxANSQEAVQCLNLAVNLFLEIGRLSMAAKHCKEIGDLYESEENFELAMQYFERAADLFRGEEVTSTANRCDLAVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNALDKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDD
A9P0M8_______________MAEQEAKGSEFERKADKKIQGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCYxxTNNQEAVRCLNLAVNLFLEIGRLSMAAKHCKEIGDLYEAEENLELAMQYFERAADLFRGEEVTSTANQCQLKVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNAIEKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1112			92	7	0.999532
1115		7		92	0.999602
1117		8		91	0.999766
1118	8			91	0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain