SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59421

Length: 925 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59421

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=12 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	40s ribosomal protein s11	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S17	IPR000266	-	95%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	95%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	95%
Blast2go	Ribosomal protein S17, archaeal	IPR019978	-	95%
Blast2go	Ribosomal protein S17, conserved site	IPR019979	-	95%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	C %	G %	T %	Probability
707	10		89	0.999919
779	90		10	0.90298
782		14	42	1.0
784		16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain