SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59416

Length: 997 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=1 Tax=Pinus taeda RepID=CAMT_PINTA	-	-	97%
FL-Next	tr=Caffeoyl CoA O-methyltransferase; Pinus pinaster (Maritime pine).	-	-	77%
Blast2go	caffeoyl- o-methyltransferase	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 3	IPR002935	-	0.0	96%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL4

Fln msg: Warning!, your query overlaps and the subject is separated, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 207 - 259

Fln protein: WGHKFVFGNFLFETTQAEEPAKVVRHQEVGHKSLLQLVALYQYxxxxxxxxxxLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEISQIPVGDGVTLCRRVY*

Protein Length: 208

Fln nts: _-_ATGGGGACACAAATTCGTCTTTGGCAATTTTCTTTTTGAGACAACCCAAGCAGAGGAGCCGGCAAAGGTTGTCCGCCATCAAGAAGTGGGACACAAAAGTCTTTTGCAGCTCGTTGCCCTCTATCAGTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCAGCACAGCCCTTGCATTGCCCGATGATGGAAAGATTCTAGCCATGGACATCAACAGAGAGAACTATGATATCGGACTGCCTATAATTGAGAAAGCTGGAGTTGCCCACAAGATTGACTTCAGAGAGGGCCCTGCTCTGCCAGTTCTGGACGAAATGGTTAAGAATGAGGACATGCATGGATCGTTCGACTTTGTGTTCGTGGATGCCGACAAAGACAACTATCTAAACTACCACAAGCGTCTGATCGATCTGGTGAAGGTTGGAGGTCTGATTGCATATGACAACACCCTGTGGAACGGATCTGTGGTGGCCCCACCCGATGCTCCCCTGAGGAAATATGTGAGATATTACAGAGATTTCGTGATGGAGCTAAACAAGGCCCTTGCTGTGGATCCCCGCATTGAGATCAGCCAAATCCCAGTCGGTGACGGCGTCACCCTTTGCAGGCGTGTCTATTGAAACCAATCCTTGTTTCTGCTCGTCTATTGCAAGCATAAAGGCTCTCTGATTACAAGGAGAACGCTATAATATATGGGATTGAAGCCATTTGTTTTGTTTAGTGTATTGATAATAAAGTAGTACAGCATATGCAAAGTTTGTATCAGAGTATTGACTATGTTTTCTTCGCCATTTCGATTTGGGGGCATCGAATTTTGTCCTCTGTATTTGGAAAACTGCAATTTACCACAGAAAAAATTCACGACTTTCTACTGATTTTAAGTTGGTAAATATGAGTTTGAATTGTTATAATAGCAAAATTGTTTTGCTAAAATTGCACATTGAAAATAACATGAGGTTTTCACGGTTTCTGAATCAACGTAGGCTATTTTCGAAG

Fln Alignment:

sp_v1.1_unigene59416___ETTQAEEPAKVVRHQEVGHKSLLQLVALYQYILGCTLVTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEISQIPVGDGVTLCRRVY
F4MKL4_______________QTTQAEEPAKVVRHQEVGHKSLLQSDALYQYILETSVYPRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEISQIPVGDGVTLCRRNY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
854	11	88			0.923564
858	83		16		0.994512
872		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain