SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59347

Length: 1882 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59347

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Progesterone 5-beta-reductase n=3 Tax=Asclepiadeae RepID=D6N9X6_9GENT	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	progesterone 5-beta-reductase	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	78%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS7

Fln msg:

Fln protein: MSWYSWWTGSLGTRGRKFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISSLKDVTHLFWVVWVSRETEEQNCEDNGRMLSNVLDALLPNAENLQHVCLQTGGKHYIGSFDVVAMNRKYQPHEAPFHEELPRLPVPNFYYTLEDIVFEAVKKKEGLTWSIHRPAYIFGFSPWSMMNVLGTLCVYAAICKHEGLPFKYPGNITSWEQFMDASDAELIAEQEIWAATDPYAKDQAFNCANGDVYKWKHLWGILAEKFDLEPLPYEGEGFSLAEVMKDKGPVWDAIVNQNKLHPTKIEEVGNWWFADLILNPPWGAVLSMNKSKEYGFFGFRNTETSMGQWVDKIRSSNIVP*

Protein Length: 401

Fln nts: ATACCCGCAATGCATACTTAATGCAGATCCGGCTACCTTGCCCTGTGCAAACCTACCAGTCCATGATCTACACCAAAATGCCCAAGGATCTACCACTCCCTGCTGCTTCACGCATATAAATCTCACGATAGCTCGATTTTTATGTCTGTGCTGCCGCGCCCTTTGCTCAAGTGAATGAATTTGTTGCAGGAATCCAGTTCGAGTGTCTGCTCAGCTGTGTTCATTTCTTCACTGCGACGCTAATTCCATTTGGGACTCGCAGCTCATCCTCAGTCAGGTCATTTGGCTCCTTTCTTGGTTTGGTGTGTGGAGTAGTGTGCATTTTATCACA_-_ATGAGCTGGTATTCTTGGTGGACAGGTTCCCTTGGCACTCGCGGGAGAAAATTCCAAACCAATGGTGAAAGCTCCAGAGATAAATCTGGGAGGCAGCAGGGAGTGGCGTTGGTCATAGGGATAACAGGAATTGTAGGAAATTGCTTGGCAGAAATATTGCCATTATCTGACACTCCTGGTGGACCTTGGAAAGTTTATGGAATTGCTAGGAGGCCTAAGCCAGATTGGTCTCCAGATAGTCCAGTGGAATACATTCAATGTGATGTTTTAGATAGAGAGCAAACTTTAGAAAAGATCTCATCATTGAAGGATGTCACACATCTCTTTTGGGTTGTTTGGGTTAGCAGAGAGACAGAGGAGCAGAACTGTGAGGACAATGGAAGAATGTTGAGTAATGTATTAGATGCCCTCTTGCCTAATGCAGAGAATTTACAGCACGTCTGTCTTCAGACTGGAGGGAAACACTACATTGGTTCATTTGATGTAGTGGCCATGAATCGTAAATATCAGCCCCACGAGGCACCCTTTCACGAAGAGCTACCTAGGCTACCTGTGCCCAATTTCTACTACACTCTCGAGGATATTGTATTTGAGGCTGTAAAGAAGAAAGAAGGATTAACTTGGTCCATTCACCGTCCAGCATACATATTTGGCTTCTCTCCTTGGAGCATGATGAATGTTTTAGGCACCCTCTGTGTTTACGCTGCCATTTGCAAACATGAGGGGTTGCCTTTCAAGTACCCAGGCAACATAACTTCATGGGAACAGTTTATGGATGCATCTGATGCAGAATTGATTGCAGAACAGGAAATTTGGGCTGCCACAGATCCTTATGCCAAGGACCAGGCCTTCAATTGTGCTAATGGAGACGTCTATAAATGGAAACACCTCTGGGGAATACTCGCAGAGAAATTTGATCTGGAACCATTACCATATGAGGGTGAAGGCTTCAGTCTGGCTGAGGTGATGAAAGACAAAGGTCCGGTCTGGGATGCAATTGTCAATCAAAATAAGCTCCACCCAACAAAGATTGAAGAAGTTGGAAACTGGTGGTTTGCAGATTTAATACTAAATCCGCCTTGGGGAGCTGTACTTAGCATGAATAAGAGTAAAGAGTATGGTTTCTTTGGATTTCGAAACACAGAAACTTCCATGGGGCAATGGGTTGACAAAATCAGGTCATCTAATATTGTTCCCTAG___GGTTGATCGATCCCTATGTATTGAATTAAAACCAAGCGGAGGGCTTACTTCACTGTTCATTCAGAACTTGCTTTTGTGATTCAACTTTCAAATTGTCCAGTGGAGGATGCTGGGTAGTTATGCTATATTCTGAAAGTTCTAGTTCGAGGTGTTGCTAATACCAGAGGATAGTTCTAGTGGGACGTGCTTTTGTCTATGTCGAAGTACTGTTTGTGAGATGAGTTAAAAATTGCTGATATTTGATGTTGTGTAATTTGCAGTGGACTTACATAAAGAGCTGAATCTCCAGCATAGTATTTCTCCACTTTTTCCAACTATTTAGTTCTGGTACTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene59347___MSWYSWWTGSLGTRGRKFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISSLKDVTHLFWVVWVSRETEEQNCEDNGRMLSNVLDALLPNAENLQHVCLQTGGKHYIGSFDVVAMNRKYQPHEAPFHEELPRLPVPNFYYTLEDIVFEAVKKKEGLTWSIHRPAYIFGFSPWSMMNVLGTLCVYAAICKHEGLPFKYPGNITSWEQFMDASDAELIAEQEIWAATDPYAKDQAFNCANGDVYKWKHLWGILAEKFDLEPLPYEGEGFSLAEVMKDKGPVWDAIVNQNKLHPTKIEEVGNWWFADLILNPPWGAVLSMNKSKEYGFFGFRNTETSMGQWVDKIRSSNIVP
A9NUS7_______________MSWYSWWTGSLGPRGSKFQTNGESSGEKPEKQQGVALVIGVTGIVGNCLAEILPLSDTPGGPWKVYGVARRPKPDWSPDSPVEYVQCDVLDREHTLEKISPLKDVTHLFWVVWVNRETEEQNCEDNGRMLSNVLDALLPNAENLQHICLQTGGKHYLGPFDAVARNRDFQPHEPPFHEELPRLPAPNFYYTLEDIVFEAAKKKQGLTWSIHRPTVIFGFSPWSLMNIVGSLCVYAAICKHEGLPFKYPGNIITWEQFMDVSDAELIAEQEIWAATDLYAKNQAFNCANGDVFKWKRLWKIIAEKFDLELLSYEGEGFSLAEVMKDKGPVWDAIVGENKLHPTKIEEVGNWWFADLVLNPPWGTVLSMNKSKEYGFFGFRNTETSMGQWIDKVRSSNIVP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1415	16	83			0.994512
1418			16	83	0.994512
1502	12	6	81		0.999943
1539			86	13	0.999973
1591		16		83	0.999991
1600	83		16		0.999991
1637	13		86		0.999973
1656		14		85	0.999981
1658		21		78	1.0
1663		14		85	0.999981
1719	69		30		1.0
1720		84		15	0.999986
1738		81		18	0.999994
1755		20	80		0.999996
1804		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain