SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59346

Length: 1259 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59346 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Replication protein A 30 kDa subunit, putative; K10739 replication factor A2	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	65%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	65%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	65%
Blast2go	Replication protein A, subunit RPA32	IPR014646	-	65%
Blast2go	Replication protein A, C-terminal	IPR014892	-	65%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A880

Fln msg:

Fln protein: MFGMQSQSDGGSLFSGGGFMPSQATQVNEGGFSSVRKSGTGTGLLPLTVKQISQATQKLSDESSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAEVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQPNSASPAAKVGSMGPPTGLSNTPSYNQFTNPGPASVGGAKDLNGRVQSIFEEPANLAIEHGVHVDDVVRRLPGFTKKQIMDSIAFLINEGYIYSTIDEDHYKSTNG*

Protein Length: 287

Fln nts: CGTCTGACCTTGGCTGTCACTCAATTGTATATTTCTTCTTTTTTCTCCGTGGGGAGTGACAGAGTAGAGATTAAAG_-_ATGTTTGGCATGCAAAGTCAATCGGACGGAGGTTCTCTATTCTCCGGAGGCGGCTTTATGCCCTCTCAGGCCACCCAAGTTAACGAAGGTGGTTTTTCGTCTGTCAGGAAAAGCGGTACCGGCACCGGGCTTCTTCCATTGACAGTAAAACAGATAAGCCAGGCAACCCAGAAGCTCTCGGATGAGAGTTCGAATTTTACAATAGATGGCGTGGATATTAACAATGTCACCCTTGTTGGGATGGTTTTCAACAAGGAAGAGAGGGTTACTGATGTGTCGTTTTATCTCGATGACGGTACAGGGAGATTAGAAGTGAAACGTTGGGTTAATGATGCAATGGAATCTGCTGAGATGGCTGAAGTGCAAAATGGTGCATATGTTTGTGTCCATGGGCATTTAAGGAGCTTTCAGAACAAGAAACTTGTCAATGCTTTCTCTGTAAGGCCTGTAACTGATTTTAATGAAGTCACGTTTCACTCCTTGGAATGCATTTTTGTGCATCTCTATAATATGAAAGTTCAGGGTGGTGCCACTCAGCCCAACTCAGCAAGTCCAGCTGCTAAGGTTGGATCAATGGGACCACCAACTGGATTGAGTAACACTCCTAGCTACAATCAATTCACCAATCCTGGTCCTGCCTCTGTGGGTGGAGCTAAAGACTTGAATGGGAGGGTTCAAAGCATATTTGAGGAACCTGCGAATCTAGCAATAGAGCATGGTGTTCATGTAGATGATGTCGTGAGGAGATTGCCTGGTTTCACAAAGAAGCAAATCATGGACTCTATCGCGTTCTTGATAAATGAAGGATACATCTACTCAACTATTGACGAGGACCACTACAAGTCAACTAATGGCTAA___TACAATAATCATACCACTGCTTCTGTGTTCTACGAGTTTGATATACAAGTCAACTAATGGCTAATACAATCATAATCATACCACTGCTTCTGTGTTCTATAAGTTTGATATCTACGTTTGGCCTCCAGACTAGGTGTATATTACTTTGAAACCTCTTCCTGTAGTCCTTGAGCTTGTGGCTATTTTTATATTCACTACCCATGTTCATTATTATTAACTTTTTGAACGAGTATGCGGTTTTGTTTGTAGGTTTCATGTTAGGAAATATTTGAGGCTAAAACATGCAATACTTGAGAATATATCTATCTACCCGAAATGTGAGAGC

Fln Alignment:

sp_v1.1_unigene59346___MFGMQXXXXXXXXXXXXXXXXSQATQVNEGGFSSVRKSGTGTGLLPLTVKQISQATQKLSDESSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAEVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQPNSASPAAKVGSMGPPTGLSNTPSYNQFTNPGPASVGGAKDLNGRVQSIFEEPANLAIEHGVHVDDVVRRLPGFTKKQIMDSIAFLINEGYIYSTIDEDHYKSTNG
D5A880_______________MFGMQSQSDGGSLFSGGGFMPSQATQVNEGGFSSVRKSGTATGLLPLTVKQISQATQKPSDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRMEVKRWVNDAMESAEMADVQNGSYVRVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQPNSASPVAK----GPPTPFSNTPSHNQFMSPGPVSVGGAKDLNRMVQSIFEEPANLAIEHGVHVDDVVRRLHGFTKKQIMESIAFLINEGYIYSTIDEDHYKSTNG

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
236	80		20		0.999999
294	29		70		1.0
299	82			17	1.0
325		21		78	1.0
487		88		11	0.999952
522		12		87	0.999964
549	6		81	12	0.999943
550		87	12		0.999964
560		12	87		0.999964
561	87	12			0.999964
562	10			89	0.999919
563	10			89	0.999919
567		10	89		0.999919
570	89		10		0.999919
571	10			89	0.999919
572		10		89	0.999919
621		88	11		0.999937
623	88		11		0.999937
624		88		11	0.999937
625		88	11		0.999952
626	11			88	0.999952
627		11		88	0.999952
632		11	88		0.999952
633	11	88			0.999952
634	11			88	0.999952
637	87			12	0.999964
639	11			88	0.999952
640		11		88	0.999952
642	11	88			0.999952
643		11		88	0.999952
725		7	14	78	0.999974
740		16		83	0.999991
741			41	58	1.0
746		36	63		1.0
749	36	63			1.0
750			36	63	1.0
751			36	63	1.0
752	63			36	1.0
901		83	16		0.994512
916	83			16	0.99452
917	83		16		0.99452
922	66	16			0.988813
925	16	83			0.994512
926	83		16		0.994512
932		20		80	0.995493
933	80		20		0.995493
937		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain