SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59334

Length: 1371 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	21 kD protein n=1 Tax=Pinus radiata RepID=O65011_PINRA	-	-	9.99967e-42	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	21 kda protein	-	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ46

Fln msg:

Fln protein: MSTSRGRITMDPSATTLPLIVIAVILASAAAENVNPLHHGHTGMAEFIKTSCKVTLHPNLCFSSLSSYSGSLRAKQSDVVKAAVTVSLVNARNVSVWATGLKTRRARMSKREKAALKDCIEDFGDTTGQIHQSLAELKHLRRNTFKAQMSNVETWMSAALTNEDSCLDGFQPASGRVKAMVTPRVQKVSKLISNALALVNKFAATGEEFELDV*

Protein Length: 215

Fln nts: ATGGGGTGGGGTATATAAGATTTTTTGGTGAGATAAAAGATTAATTTTTGTTACACAATATGAGGCTCACCTACTCAGCTTTGTTTCTGCTTACACCTGGACATATGAATTTATGTAAAACACTCTCTTAGGGGACTATAGCTCAAGCTCTTTAGCTTACAGACTTTGATTATAAGGTTCGTATTTGTAAAGGAAAGAAGGCTCCAGGATTATACACTTATTCAGTCGGTATCATTAAAATCAGATACAAACAGTGTCTTTACAGTAACCAGCACTATAAAGGCGTCAACGATCATGCATGGGGACAACGCTAGGAAGCAGTGCCAACTCACATTTTCATAACAGAGCAGAGCCGAGCCGAGCCGAAACCTCCAGATATATCTTCT_-_ATGAGTACGTCTCGAGGTCGAATCACCATGGATCCGTCCGCTACTACTCTTCCTTTGATCGTAATTGCAGTTATACTGGCTTCAGCAGCAGCAGAGAACGTGAATCCCCTTCACCACGGCCATACAGGCATGGCGGAATTCATCAAAACTTCGTGCAAAGTGACTCTGCATCCGAATCTCTGCTTTTCGTCGCTCTCTTCCTACTCGGGGTCTCTGAGGGCCAAGCAGAGTGATGTCGTGAAGGCAGCCGTGACGGTGAGCCTCGTTAATGCCCGCAATGTTTCTGTTTGGGCCACGGGCCTGAAAACCAGAAGAGCCAGGATGAGCAAAAGAGAAAAGGCGGCGCTCAAGGATTGTATTGAGGATTTCGGGGACACCACGGGCCAGATTCATCAATCTCTGGCGGAGCTGAAGCACTTGAGGCGTAACACGTTCAAGGCTCAGATGAGCAACGTGGAAACGTGGATGAGCGCGGCGCTCACCAACGAGGACTCCTGTCTCGACGGCTTTCAGCCTGCCAGTGGGAGGGTTAAGGCCATGGTCACGCCCCGCGTGCAGAAAGTGAGTAAATTAATCAGTAATGCCCTTGCCCTTGTCAACAAATTCGCAGCCACTGGAGAAGAATTTGAGCTCGATGTCTGA___CAGCAGAAACCCTCACGGTGTTCTTTGATGTCCGTCAATATATATTATCAATGTTAATAGAATCTGCGTATTAGAGGTTTCTCGCCATCTGTACCTTGACGTTATGCGAAATTTAGCATATTTTGAATTGTAAACTATATGCTATGTTGATATATGGGCTCGATGTCTGACAGCAGAAGCCCTCACGGAGTTCTTTGATGGCCCTTAATATGTATTTTCAATGTTAATAGAATCTGCGTATTAGAGGTTTCTCGCCTTCAGTACCTTTGACATTATGCTAAATTGAGCATATTTGAATTGTAAACTATATGCTATGTTGATATAATGTTAGTTATAATTGATT

Fln Alignment:

sp_v1.1_unigene59334___VNPLHHGHTGMAEFIKTSCKVTLHPNLCFXXXXXXXXXXRAKQSDVVKAAVTVSLVNARNVSVWATGLKTRRARMSKREKAALKDCIEDFGDTTGQIHQSLAELKHLRRNTFKAQMSNVETWMSAALTNEDSCLDGFQPASGRVKAMVTPRVQKVSKLISNALALVNKFAATG
A9NQ46_______________LNPVH-SDAQMAEFIRTSCNVTLYPQVCVSSLSSYAGPLKPKQSDLVNAAVQVSLVNTHNVSVWAAGLKTRRATMSKREKAALKDCMENFGTTMDQIHQSLAELKHLRRNTFKIQMSNVETWMSAALTNEDSCLDGFQVAKGRVKAMVTGRVHYLSKLISNALALVNTFAATG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1315	75	25			0.996473
1323			25	75	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain