SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59324

Length: 1278 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59324

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AFC1; AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	afc1 (arabidopsis fus3-complementing gene 1) atp binding kinase protein kinase protein serine threonine kinase protein tyrosine kinase	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Separated hits, possible frame ERROR between 341 and 442, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 323 - 459

Fln protein: FSGKRNKFFSVNSWLYSQNKII**WLLLWFNTFILYSLVSVSLFVYSHTFQATNPDSYPFSKGLEKSSQEKCDRLPKSSAIKLIDFGSTTFEGEDHTSVISTRHYRAPEVILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTGLGWSYPSDIWSVGCILVELCLVIYRTITFCEDDI*SIVN*KYIYHSCILNMQGKTLFQTHENLEHLAMMERVLGPLPHRMIKKSVCKSAKYFRHGKRLHWPEGASSRDSIRAVRKLCHLRNLIMEHVDHSAGLLIDLLQGLLKFEPSERLKASEALSHPFFLEGSKFHKYGT*

Protein Length: 324

Fln nts: AGTTCAGTGGCAAGAGAAACAAATTTTTCTCGGTTAACAGTTGGTTGTATTCTCAAAACAAAATTATTTGATAATGGCTCCTTCTTTGGTTCAACACGTTTATTCTTTACTCTCTGGTCTCTGTGTCTTTATTTGTATATTCTCATACATTCCAAGCGACAAACCCTGATTCGTATCCGTTTTCAAAGGGTTTGGAGAAGTCATCACAAGAAAAATGCGACAGATTGCCAAAGTCAAGTGCAATAAAGTTGATTGATTTTGGAAGTACCACTTTCGAAGGAGAAGATCATACATCAGTGATCTCTACAAGGCATTATCGAGCTCCCGAAGTTATATTGGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGACAGGACTTGGATGGAGCTACCCCTCTGATATTTGGAGTGTAGGATGCATACTTGTGGAGCTTTGCTTGGTAATTTATCGTACAATTACATTTTGTGAAGATGATATTTAATCCATTGTAAATTAGAAATATATTTATCATAGTTGCATATTAAACATGCAGGGAAAGACACTATTTCAAACCCATGAGAATTTGGAACATCTTGCCATGATGGAAAGGGTTTTGGGCCCATTGCCACATCGTATGATAAAGAAATCAGTTTGCAAAAGTGCAAAATATTTTCGGCATGGAAAAAGGTTGCATTGGCCAGAAGGAGCATCTTCCAGAGATAGTATCCGAGCAGTTAGGAAGTTGTGCCACCTAAGAAATTTGATCATGGAGCATGTGGACCATTCAGCTGGTCTACTTATAGACTTGCTGCAAGGACTTCTCAAGTTTGAGCCTTCGGAACGTTTGAAAGCTTCAGAAGCTTTGAGTCATCCATTCTTCTTAGAGGGTTCCAAATTTCATAAATATGGTACATAGAAATCATGAGAATTCTTGATTCGCTGCATGGGACAATGTTGGATTGTTATCAACTTCGTTGGTCTCAGGTGCCAGGCATCATCGGTCTCCTAGGCTTCTGAACCAGGAGAACTTCGAGACATCCATTCTTCGAAGATAATGCTGTCTGCCTAACGATAATCCATTACAGCATAAAGTTTGGGCTCTCCCTGCATGAGGCAAATATGAGTGGGATTGACTTTGTTGGTCTCTGCCACGAGGGTCCCCAATCGAGTTAAAAGCGGATGGGATATGTACAGGATTGGGACAATTTTTTGGGTGGCTATGTTC

Fln Alignment:

sp_v1.1_unigene59324___FSKGLEKSSQEKCD--RLPKSSAIKLIDFGSTTFEGEDHTSVISTRHYRAPEVILGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTGLGWSYPSDIWSVGCILVELCLVIYRTITFCEDDI*SIVN*KYIYHSCILNMQGKTLFQTHENLEHLAMMERVLGPLPHRMIKKSVCKSAKYFRHGKRLHWPEGASSRDSIRAVRKLCHLRNLIMEHVDHSAGXXXXXXXXXXKFEPSERLKASEALSHPFFLE
B8LL66_______________YKNGLKRLSQDGTCYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVILGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILGLGWSYPADVWSIGCILVELCV-------------------------------GETLFQTHENMEHLAMMERVLGPFPQHLIRKADARSAKYFRHGTRLNFPEGASSRESIRAVKKLPRLRNLVMERADHSAGALIDLLQGLLKYEPSERLEAQEALRHPFFTE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1099	90		10	0.90298
1101	90		10	0.90298
1106	10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain