SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59314

Length: 1573 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59314

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: your sequence is shorter than subject: 382 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL*

Protein Length: 383

Fln nts: CGTCGTGACCTTGGCTGTCAGGGGATAGTGATTTCAATCGAGCGTTGAGGGATTTTTCATAAACACAGGCGAAGCGTTTTTATTTCAGGCGTTTTGTTTGTAAATTTCAGAGTTCAAA_-_ATGCAGATATTCGTGAAGACATTGACCGGAAAAACCATAACTCTTGAGGTGGAGAGCTCGGACACTATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGACTATAACATTCAGAAGGAATCCACTCTTCACCTTGTCCTTCGTCTTAGAGGGGGAATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTTTGGAAGTCGAAAGCTCTGACACAATTGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGGATTCCACCCGACCAGCAGAGGCTAATCTTTGCTGGAAAACAGCTTGAGGACGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTCCTCCGTCTCAGAGGAGGGATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAGCAGAGGCTGATCTTTGCTGGGAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAATATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGGATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTTGAGAGCTCAGACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCAGCAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTAGCCGACTACAACATTCAAAAGGAATCTACACTGCATCTTGTCCTTCGCCTCCGCGGTGGTATGCAGATATTTGTGAAGACATTGACAGGCAAGACCATAACACTGGAGGTTGAGAGCTCTGATACGATTGATAACGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGAACCTTGGCGGATTATAACATTCAGAAGGAATCGACCCTCCACCTTGTCTTGCGTCTGCGTGGTGGCCTTTGA___GATTGTGGGGAATGTTGAAGTTATCGTCAAAGCCTTGCCCTGTAGTGTCATCGTGTATTCGGTTTTAGATGTTGGCTTGTAGTGTCATAGTGTATTCAGTTTTAGATGTTGGCTTCGAAGTACAGTGATAGGTACTCCTTTCAAATGTTTTGTGCTTTGTTTTTCTTTGGAGCGTTAAAAAGTTGTCTCTGAATGGATTAAGATTCGAATTACAGGGATAGCCACTCCTTTGAAATGTTTTGTGATCTGTGCGTTGTTAGAGTAAGTAAATTTTCTCTGAATTAAATAAAAGCTGCGTTTTCAAAAAAA

Fln Alignment:

sp_v1.1_unigene59314___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1287	10		89		0.999919
1289			90	9	0.999842
1290	90	9			0.999842
1292	8	4		87	0.999414
1293	8		91		0.999766
1294	8			91	0.999766
1476		90		9	0.999872
1485	9		90		0.999872
1512		88		11	0.999952
1514		88		11	0.999952
1591		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain