SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59293

Length: 636 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59293 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L18 (RPL18C); K02883 large subunit ribosomal protein L18e	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	60s ribosomal protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L18e	IPR000039	-	0.0	90%
Blast2go	Ribosomal protein L18e/L15P	IPR021131	-	0.0	90%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
611	20	40	20	20	0.994182
612	20	40	20		0.994168
613	60	40			1.0
614	60		40		1.0
615			20	80	0.995493
625	66	33			0.997476
626		33	66		0.997476
635		33	66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain