SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59215

Length: 505 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene59215
CGTCGTGACCTTGGCTGTCACTCAAAATGGGTGACCGGTCGTCACCTTGGACAAATCTTACTACAGTCGGCTTATATCTGGGTGTCCGAAATCGGGAGGAGATAATAACTTGTCCCCATTGGATTTTGTGAGTCCTACGAAATTCGACAACTACTACTTCAAGAACTTGCTGAGCGGGTATGGACTGTTGAACTCAGACGAAGAATTGTTCGCCAAGGGCGAAGGGAAGACCATGGAAACAGTGAAAGCTTACGCAGAAAATGAAGAGCTCTTTCTCCAACAGTTTGCAGAATCAATGGTGAAGATGGGGAACATCGGCCCTCTTACAGGCACCATGGGAGAAATCAGGACCAATTGTCGTACTGTTCTCAGTTGATCTCGAGTTCAATCAATTTCAACAATTTTGTTGCTATAGCTTACATTCCCGTTTGTAGCTGCCATCAAAATGCATTTTTAAATGATCCTTTCGAGCGCATTCACATCTATAATAATTATGCCGCCAGTA

Ace file of the UniGene sp_v1.1_unigene59215

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase 9, putative n=1 Tax=Ricinus communis RepID=B9R800_RICCO	-	-	2.0e-34	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	peroxidase 72	-	-	5.60519e-45	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg: your sequence is shorter than subject: 125 - 344

Fln protein: VVTLAVTQNG*PVVTLDKSYYSRLISGCPKSGGDNNLSPLDFVSPTKFDNYYFKNLLSGYGLLNSDEELFAKGEGKTMETVKAYAENEELFLQQFAESMVKMGNIGPLTGTMGEIRTNCRTVLS*

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGGGTGACCGGTCGTCACCTTGGACAAATCTTACTACAGTCGGCTTATATCTGGGTGTCCGAAATCGGGAGGAGATAATAACTTGTCCCCATTGGATTTTGTGAGTCCTACGAAATTCGACAACTACTACTTCAAGAACTTGCTGAGCGGGTATGGACTGTTGAACTCAGACGAAGAATTGTTCGCCAAGGGCGAAGGGAAGACCATGGAAACAGTGAAAGCTTACGCAGAAAATGAAGAGCTCTTTCTCCAACAGTTTGCAGAATCAATGGTGAAGATGGGGAACATCGGCCCTCTTACAGGCACCATGGGAGAAATCAGGACCAATTGTCGTACTGTTCTCAGTTGA___TCTCGAGTTCAATCAATTTCAACAATTTTGTTGCTATAGCTTACATTCCCGTTTGTAGCTGCCATCAAAATGCATTTTTAAATGATCCTTTCGAGCGCATTCACATCTATAATAATTATGCCGCCAGTA

Fln Alignment:

sp_v1.1_unigene59215___NG*PVVTLDKSYYSRLISGCPKSGGDNNLSPLDFVSPTKFDNYYFKNLLSGYGLLNSDEELFAKGEGKTMETVKAYAENEELFLQQFAESMVKMGNIGPLTGTMGEIRTNCRTVLS
B8LPA0_______________NGQPDFTLDKSYATQLKSGCPKSGGDNNLFPLDFVSPTKFDNYYFKNLLSGHGLLNTDEELFSKGQAKTRKLVKEYAENEELFLKQFALSMVKMGNIKPLTGSNGEIRVNCRKVNS

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
132		40		60	1.0
137	66			33	1.0
139	33			66	1.0
143	66			33	1.0
144		66	33		1.0
146	66	33			1.0
147	66			33	1.0
148	57	14	28		1.0
149			14	85	0.993534
150		28		71	1.0
151	28	71			1.0
152		28	71		1.0
153	57			42	1.0
154		85	14		0.993535
156	85	14			0.993535
161	83		16		0.994512
165	83			16	0.994512
168		16		83	0.994512
173			83	16	0.994512
231		50	50		1.0
234		16	83		0.994512
260			20	80	0.999996
266	80			20	0.999996
269	77	22			0.999999
270	80	20			0.999996
271	80			20	0.999996
275	80	20			0.999996
276	80			20	0.999996
279	80	20			0.999996
280	20		80		0.999996
284	20			10	0.999998
330	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain