SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59212

Length: 1133 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59212

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PIP2;2; aquaporin PIP2;2	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	aquaporin	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	89%
Blast2go	Aquaporin	IPR012269	-	89%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	89%
Blast2go	Aquaporin-like	IPR023271	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSY9

Fln msg:

Fln protein: MTKEEGEQQGFANKDYTDPPPTALIDINEFTLWSFYRALIAEFIATLLFLYITIATVIGQSRTSTDCGSVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGVGLVKGFQRSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDQWIFWVGPFVGAALAAGYHQYILRAAVIKALGSYRSNVNA*

Protein Length: 281

Fln nts: GGCCATCCATTCATTCACTGTCTCTGCAACATCTGAGTTCTGTGTATCCCACCTCCCCTGCAGTTCTGACCATCTCTTCTATAAGCCCAGAAGAAGTTTTAAGTTCATCAGCAGCAGCAGGAACTCAGTACCAGTAGTC_-_ATGACAAAGGAAGAAGGAGAGCAGCAGGGCTTTGCCAATAAGGACTACACAGACCCACCTCCCACTGCACTCATTGATATTAATGAGTTCACTCTCTGGTCATTCTACAGGGCTTTGATAGCAGAATTCATAGCCACACTGTTGTTTCTCTATATTACGATTGCTACCGTGATTGGGCAGTCCAGGACCTCAACGGACTGCGGGAGTGTTGGGGTATTGGGCATTGCCTGGGCCTTTGGGGGCATGATTTTCGTTTTGGTTTACTGCACCGCTGGTATTTCAGGTGGGCATATCAATCCTGCTGTCACTTTTGGCCTATTTTTAGCTAGGAAGGTTTCCTTGCCAAGGGCTATTCTGTATATGATAGCCCAGTGTTTAGGGGCCATTTGTGGGGTTGGATTGGTGAAAGGCTTTCAAAGGAGTTTCTACGATAGATATGGAGGTGGAGCTAACTTTGTGCACCCTGGATACACCAAGGGTGTGGGTTTGGCTGCTGAAATCATCGGCACCTTTGTGCTGGTTTACACTGTTTTCTCTGCAACTGATCCCAAACGCAGTGCTAGGGACTCCCATGTTCCTGTCTTGGCTCCATTGCCTATTGGGTTTGCTGTTTTCATGGTGCACTTGGCTACCATTCCCATCACTGGTACCGGCATCAACCCTGCAAGGAGTTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCCTGGAATGACCAATGGATTTTTTGGGTGGGTCCTTTCGTTGGAGCTGCATTAGCTGCTGGCTACCACCAGTACATTCTGAGAGCAGCGGTCATAAAGGCCCTGGGGTCGTACCGAAGCAATGTTAATGCGTAA___TTAGGCAACACTCGTTGTTAGTTGGAGTGTCTATGAATCAAGTCCGGAGGTTTGCAATAGATGAATAAGTACTATGAACTATTATGTCTAGCGCTGGATGAGACCAAGTAGCAACACAGTAAGGAGTGTCGCTTCTTCGCTCAGCACCTTCATT

Fln Alignment:

sp_v1.1_unigene59212___MTKEEG---EQQGFANKDYTDPPPTALIDINEFTLWSFYRALIAEFIATLLFLYITIATVIGQSRTSTDCGSVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGVGLVKGFQRSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDQWIFWVGPFVGAALAAGYHQYILRAAVIKALGSYRSNVN
A9NSY9_______________MTKEEGKELEQQGFAPKDYTDPPPAALIDANEFKLWSLYRALIAEFIATLLFLYITIATVIGHSRTSADCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGAGLVEAFQKSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDHWIFWVGPFVGAALAAAYHQYILRAAAVKALGSYRSNVD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
581	11		88		0.991528
634		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain