SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59199

Length: 1909 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59199 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	arf gtpase-activating	-	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S4

Fln msg:

Fln protein: MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKPEEPASISIPSSASTAVQDASRPSRFTYMENNSNSNSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKLSSFASSFIADF*

Protein Length: 408

Fln nts: CGTCGTGACCTTGGCTGTCAATGGAAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCA_-_ATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGATCTGTAAACCTGGATTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGCAGCATGGTTGGAATGATGGAGGTAAAATAGAATCGAAATACACATCAAGAGCAGCTGAGCTATATAGACAGCTTCTTGCAAAGGAAGTTGCTAGAAGCTTGACAAATGGAACAAGTCAGACACCATCCTCATTGCATGATGCTTCACAATCAAACCATGTGACTAATGGAGACTCTAATGGAAAGAGTTCAAATTTAGCAACTGATTTTTTCTTCAACGATGAAATTGATGCACCTCAAGTAGTTCCTTCTAAAGCTGAAGTAGGTCTTCCACCTCCAGCTATTGCAAGTACAGTTAAAAAACCACTGGTAGCTAAGAGAATTGTTGGAAATAAAACTGGTGGGCTTGGTGTCAAAAAGCTTACAACTAAGCCAAAGGAGGATCTTTATGATCAAAAGCCAGAAGAACCTGCATCTATTAGCATTCCTTCAAGTGCATCTACAGCAGTACAGGATGCCTCTCGCCCTTCTCGGTTCACATACATGGAGAATAACTCCAATTCAAACTCAAATGGTGGAGCACACATCTCTGGTCATGTTCCTCCTCCTGCAGCTGCCAATTTTTTTGATGATTTTGGATTAAGTGCGGGAAATCAAAAGAAAAAGAGCTCAAGCCGCTCTCCACAGGTTGAGGAAAGTAATGAGGCAAGGCAGAAATTTGCAAATGCCAAGTCAATATCATCTTCGCAATTCTTTGGCGAGAACAAGAATGCAGTCGATACAGAAACTCATGTCCGCTTGCAGAAGTTTTCTGGGTCGTCGGGCATATCAAGCAACGAGCTTTTTGGACATGATGAGTATGATTCTCCTCTGGACATGACAGCAAGTGAACTTATTACAAGGATTTCATTGCAGGCATCTCAGGACTTATCAACCCTAAAGAACATAGCTGGTGAGACTGGGAAGAAGCTATCTTCATTTGCTTCGAGCTTTATTGCAGATTTTTAG___GGTAGCATCGTATGATCAACATATTTCGAGATTTCTGGGTGTGACCATGAATGCAAGTTTGTGATAAGTAGTCAGTCTTGGGCTATGCTATTTTCATTCTTTGTTTTATTTGTTGTACTGGTTGGCCGGGTGACAGGAAATAGTAAACGATATACCTCCGGAGCCGACAAGATTGCATTGAAGAAGGGTATGAACTATTTCATCTGCGGCTTTGCTGGCCACTGCGCTTCGGGCATGAAGATTGCGATCCACGCAAGTTAAATGATCTGTAAAAGCATATTAGGGTTTTGGATTCCGTTTTAGGTTAGTGATATCGTTAATTTGTGGGTTTATAATAATAATGAAATGTGTGAGACATTGATCTGTTAATGCTTTTTACTAAAATAAAGAAGTGATGGAGTAAGTGCGACAGGGTTATTAGATTTATTCCTTTCGAAGAATGATCTTACATATGGTGCCACTTGACCTGTTTATGTAGTTAGCATGGAATTTTTTTTTCAATGATCACATTAGAACTAACTCTGAGCTGACCAGAGTTCAAACATGTGTGTAAG

Fln Alignment:

sp_v1.1_unigene59199___MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKXXXXXXXXXXXXXSTAVQDASRPSRFTYMEXXXXXXXNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKL
D5A9S4_______________MAAEDFSDKNAVFRKLRAKPENKMCFDCSTRNPTWASVTYGIFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDEGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLPDASQTNHVTNGDSNGKSSNLGTDFFFNDEIDAPQAVSSKAQVGLPPPAIASTGKKPLVSKRIVGNKTGGLGVKKLTTKPKENLYDQKPEEPASTSIPSSASTAIHDASRPSRFTYMENNSNADSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKNSSRSPQIEESNEARQKFANAKSISSSQFFGEHKNALDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDLTASELITRISLQASQDLSTLKNIAGETGKKL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1844	11		88		0.923564
1903		14		85	0.993533
1907	14	42			1.0
1908		14		85	0.993533
1909		50	16	33	1.0
1910	16	50	33		1.0
1911	50	33	16		1.0
1912	16	16	33	33	1.0
1914		20	60	20	0.992572
1916		75		25	0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain