SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59196

Length: 1934 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59196

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein [Arabidopsis thaliana] dbj\|BAB09051.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD43173.1\| unknown protein [Arabidopsis thaliana] gb\|ABD19686.1\| At5g65830 [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	leucine-rich repeat family protein	-	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPV4

Fln msg: Separated hits, possible frame ERROR between 577 and 595, your sequence is shorter than subject: 267 - 293

Fln protein: MPDAEEIQRRRNVSSSNTAMANCKVVLWIFFFLFLMVLLEDFVHADPEDVACLSGVKGSIQDPANKLTQWTGDKIETxxxxxxxPFISNCTNLQSLDLSANRLAGEIPTELQYLVNLAVLNLSVNELAGPIPPSLILCAYLNVIDLHDNRLTGNIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNKSGVLPRFNASSFVGNKELYGYPLPTPKSHGLSVMAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAATGTCTTCGATTCAAATCCAGTGGCACTGAGGTTACTGCGCCACCGCAATCGGTCCAAGGTTCGAAGCCCGGCAAAGTGGGGTTCAACAACTTTTTAAATCCGAAGGCTCGAGAGCCTGAGGCTCTGCCAGTGCCAGTGGCAGGGAGGTTTTCCTGTGTCTGTATTCGAGCTTTCCGTATCTTCTGAGTTTTAATGGCGGACTCTTTCGTCCTGTTGCGGTCGTCACCATGATCTCGTTGTTCATCTTATCTATATATCGTGCCCTTTGCTCTCCGCCTCATGATTACTGTGTTATAATGCTGGAAATCAAGCAGG_-_ATGCCTGATGCCGAAGAGATTCAACGCCGTCGCAACGTCTCGAGTTCGAATACCGCTATGGCGAACTGCAAGGTGGTTCTGTGGATCTTTTTCTTTCTATTTCTAATGGTGTTGCTGGAGGATTTTGTTCACGCAGATCCGGAGGACGTTGCCTGTCTCTCAGGCGTCAAGGGTTCAATCCAGGATCCCGCCAACAAGCTCACGCAGTGGACCGGAGACAAGATCGAAACCCCxxxxxxxxxxxxxxxxxxTCCTTTTATTTCCAACTGCACCAATTTACAGTCCCTGGACTTGTCGGCCAACCGTTTAGCCGGCGAAATCCCGACGGAACTCCAGTATCTCGTCAATCTTGCAGTCCTGAATCTTTCTGTCAACGAGCTCGCGGGTCCGATTCCCCCGTCGTTAATCCTCTGCGCTTATCTAAACGTCATAGATCTGCACGACAACAGGCTTACCGGCAACATTCCTCCGCAGCTGGGGCTATTGACGAGGCTGAGCGCGTTCGATGTTTCGAAGAACAAACTACAGGGTATGATACCGCCATCTCTTGTCAATAAAAGTGGGGTTTTGCCGCGCTTTAATGCGAGTTCTTTTGTGGGGAACAAGGAATTGTATGGATACCCGTTGCCGACGCCCAAGAGCCACGGGCTCTCCGTGATGGCCATCGTGGGGATCGGATTAGGAAGCGGTATGCTCAGCCTGGTCGTCAGCTTTACAGCCGTTTGCATTTGGTTACGCGTGACGGAGCAGGGATACGCAGCGGAAGAGGGGAAGATCACGCATCTCATGCCTGAATATTGA___CAGCAGGGCCGGCCCGAGTTCGAAACCCCGCGATGGTCACTAGATACAGTAGGCTGCCGTTTTGCTTGCTGGTAAGGAGTCGTTAGGGTTACTAATCTTGAATAATTAACACGCACACTATAATGGCGAAGGCCGCAGGGCCTGGGGATTCGCGATCGAATCCTGAAACGCCCCCTTTGGCTGTTGTGAAGCCTACAGCCATGGCATAGCATTTTCATGCTCTGTAACCAAATTTTTTGTCAGGGTGAACGATGGTTTTTAATGGATTTGTATTCATGAGCAGCAGCTGCTGCTGTTTATGTATTTCATCGTTTTAGATGTGGTTCCATGCTAACAAATTCTGCTCGGCTGGGCTCGGCTCTGAGCTTATTACGTCTTTCTGTATGTATGTATGGATTTATTTCTGCTGCAACTGCAGTGGGGTTTGATGTTGGGTTGCCGGCCTGTTTTCCAGTGAAGGGGAAATATCAATCCCAATATCAATCCCACATGCATAGCACGTTGTTTTCGATGGTAGCTGGAGCGTGCCAATTTAAAGATGTGGAGAGTATTGTACTTTCAGAGATGTAGGTTTGTCAGTTCTTAAATACAAACAAATCTTGTACTGTAAAATTATTATCACTGCGGGAGAGGTCTGAAATGGTTGTTGGCATCCATGTGCAAGAGATTAGATAACTGTCTTGCAACCATGATTCCCGGGAACTTCTTTCATTCCGGGCTAATGTCAGTGTTATAAATGTAATTTAATTTGATTTGATTTCATCTATAATAAGCCCTCGTCATATTTTGAT

Fln Alignment:

sp_v1.1_unigene59196___MPDAEEIQRRRNVSSSNTAMANCKVVLWIFFFLFLMVLLEDFVHADPEDVACLSGVKGSIQDPANKLTQWTGDKIETPxxxxxxPFISNCTNLQSLDLSANRLAGEIPTELQYXXXXXXXXXXXXXXAGPIPPSLILCAYLNVIDLHDNRLTGNIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNKSGVLPRFNASSFVGNKELYGYPLPTPKSHGLSVMAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY
A9NPV4_______________MPDAEENHHHRDVSSSNPAMANGKGVLWIFFLLSLMVLLEDFVHADPEDVACLSGVKGSIQDPANRLMGWTGDKLKTPxxxxxxPFISNCTNLQSLDMSANRFTGEIPTELQYLVNLAVLNLSVNELTGLIPPSLILCAYLNVIDLHNNRLTGSIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNRSGVLPRFNASSFLGNKELYGYPLPTPKSHGLSVIAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1424	88		11		0.923564
1467	76			23	1.0
1468			23	7	1.0
1471	69		7	23	1.0
1473		76		23	1.0
1474		23		76	1.0
1475	23		76		1.0
1478		15	76		0.999983
1479	15	84			0.999986
1567			14	85	0.999981
1569		14		85	0.999981
1570		85	14		0.999981
1576		14		85	0.999981
1577		14	85		0.999981
1582			14	85	0.999981
1583	85	14			0.999981
1586			85	14	0.999981
1590		14		85	0.999981
1592		14		85	0.999981
1812	11		88		0.923564
1851	11		88		0.923564
1853			11	88	0.923564
1868	77			22	0.999999
1922		28	71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain