SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59173

Length: 568 nt

UniGene Fasta

>sp_v1.1_unigene59173
GCGCCCATAATTATACACCAGGACAGCCCCAACGGCCTCAAGGCTCACGTACTAGAGATTGTCAACGGGTGCGACGTAGCGGAGAGCTTGGCGACGTTAGCACGCAGGCGGCAGCGGGGAATCTGTATTCTTAGCGGGAGCGGGATGGTGATGAATGTGAACCTGAGACAGGCGGCCGCGCCGAGCGCAATCGTGACTTTGCACGGACGGTTCGAGATCCTATCCCTYKYCGKGWCSTTGSCTGYCACCKCMTGTGCCGCCCGGGGCTACAGGACTCACAATCTATCTCGCCGGTGGACAAGGACAAGTAGTGGGCGGGAGCGTTGTGGGCGCTCTGGTGGCCTCCGGCCCAGTCGTGGTAACCGCTGCAACATTCCGCAACTCCCCTTACGAACGCCTGCCGCTAGATGAGGAGGAGGGGCCGATGCCTATGCCGCTGCCTATGCCGCTCCAGCGCTCTGGTGGCCTCTCTCAAACATCCCCTATGACGGCGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAATGCCCGATCCGTCCTCCATGCCCACCTTCAACGTACCCCCC

Ace file of the UniGene sp_v1.1_unigene59173

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO	-	-	4.0e-28	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	dna binding	-	-	7.22546e-28	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF296	IPR005175	-	7.22546e-28	82%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 67 aas, putative chimeric sequence, your sequence is shorter than subject: 137 - 271

Fln protein: APIIIHQDSPNGLKAHVLEIVNGCDVAESLATLARRRQRGICILSGSGMVMNVNLRQAAAPSAIVTLHGRFEILSLSGSLAVTSCAARGYRTHNLSRRWTRTSSGRERCGRSGGLRPSRGNRCNIPQLPLRTPAAR*

Protein Length: 138

Fln nts: GCGCCCATAATTATACACCAGGACAGCCCCAACGGCCTCAAGGCTCACGTACTAGAGATTGTCAACGGGTGCGACGTAGCGGAGAGCTTGGCGACGTTAGCACGCAGGCGGCAGCGGGGAATCTGTATTCTTAGCGGGAGCGGGATGGTGATGAATGTGAACCTGAGACAGGCGGCCGCGCCGAGCGCAATCGTGACTTTGCACGGACGGTTCGAGATCCTATCCCTttcCGgGtCcTTGgCTGtCACCtCcTGTGCCGCCCGGGGCTACAGGACTCACAATCTATCTCGCCGGTGGACAAGGACAAGTAGTGGGCGGGAGCGTTGTGGGCGCTCTGGTGGCCTCCGGCCCAGTCGTGGTAACCGCTGCAACATTCCGCAACTCCCCTTACGAACGCCTGCCGCTAGATGA___GGAGGAGGGGCCGATGCCTATGCCGCTGCCTATGCCGCTCCAGCGCTCTGGTGGCCTCTCTCAAACATCCCCTATGACGGCGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAATGCCCGATCCGTCCTCCATGCCCACCTTCAACGTACCCCCC

Fln Alignment:

sp_v1.1_unigene59173___PIIIHQDSPNGLKAHVLEIVNGCDVAESLATLARRRQRGICILSGSGMVMNVNLRQAAAPSAIVTLHGRFEILSLSGSLAVTSCAA
B8LPP3_______________PVVITRDSEDAMRPHILEVAGGHDVVECLTQFCGRRQVGLCVLSGRGMVTNVTIRQATGTGSTVTFHGRFEILSLSGAYTAPSGAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain