SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59139

Length: 1020 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59139

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF transcription factor 3 n=2 Tax=Vitis RepID=D3Y3F2_9ROSI	-	-	2.0e-24	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	dna binding transcription factor	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to fungus	GO:0009620	Biological Process	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	0.0	52%
Blast2go	DNA-binding, integrase-type	IPR016177	-	0.0	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg: your sequence is shorter than subject: 322 - 419

Fln protein: QQPISPTKGFELPLARGLDGPAASSAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPPSVKKESNNAKGSKKESSKKIKSYTTPKADFFQGFKTANPSIAQYNFHQKSPNPSYDDLGYQNPLSPLHAICNRNFAAKQSSSALPAYSTEFSDFDDSEVDNMGPQPESFEPMKNIHKRKGYNSFESDISSVSADRSHISWATEVKTPEISSVPKAEANSDQYDFVDMSTPVATSVSAGSPEVMLPPFNNGLNKSPSVGIGDASFPDGENALQLWSFDAVPISDSAY*

Protein Length: 323

Fln nts: CAGCAGCCGATATCACCCACCAAGGGTTTCGAGCTTCCTTTAGCTCGGGGCCTGGATGGACCGGCGGCTtcGaGCGCtgGGAGAAAGAGGAAGAATTTGTACAGAGGGATCAGGCAACGTCCATGGGGGAAATGGGCTGCAGAGATCAGGGATCCCAGAAAAGGCGCTAGGGTTTGGCTTGGTACCTTTAATACGGCGGAGGAAGCTGCTCGGGCTTATGATGCAGCTGCACGAAAGATCAGAGGTAAGAAGGCGAAAGTTAATTTTGTTGATGAGCCACCACCCTCCGTTAAGAAGGAAAGTAATAATGCCAAGGGTTCCAAGAAAGAGTCCAGCAAGAAAATAAAATCATATACTACCCCAAAGGCTGACTTTTTCCAAGGTTTCAAAACGGCGAACCCTTCGATTGCCCAATACAACTTCCATCAGAAATCCCCAAACCCTAGCTATGATGATCTAGGGTATCAAAACCCCTTATCGCCATTACATGCCATCTGCAATCGAAACTTTGCCGCCAAACAGTCGAGTTCCGCGTTGCCTGCATACTCCACTGAGTTTTCTGATTTCGATGATTCCGAGGTCGATAATATGGGACCCCAGCCTGAGAGTTTTGAACCGATGAAAAACATACATAAACGAAAAGGGTATAATTCCTTTGAGTCCGACATCAGCAGCGTGTCTGCTGATAGATCCCATATCTCGTGGGCTACAGAAGTGAAAACCCCTGAAATATCTTCTGTACCAAAAGCCGAAGCCAACTCTGATCAGTATGATTTTGTTGATATGTCTACGCCCGTTGCGACGAGTGTTTCAGCAGGCAGCCCTGAGGTAATGCTTCCTCCATTTAATAATGGTTTGAATAAATCTCCTAGTGTGGGTATTGGTGACGCTTCTTTTCCGGACGGTGAGAACGCCTTGCAGCTTTGGAGTTTTGATGCTGTGCCTATTTCCGATTCAGCTTATTGA___ATTAGCCTTGAATCTCTTGCCTGTAACaGTAATTAGTAATTATGCAAGAATCAA

Fln Alignment:

sp_v1.1_unigene59139___SAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTXXXXXXXXXXXXXXXXXXXXXVNFVDEPPPSVXXXXXXXXXXXXXXXXXXXXYTTPKADFFQGFKTANPSIAQYNFHQKSPNPSYDDLGYQNPLSPLHAICNRNFAAKQSSSALPAYSTEFSDFDDSEVDNMGPQPESFEPMKNIHKRKGYNSFESDISSVSADRSHISWATEVKTPEISSVPKAEANSDQYDFVDMSTPVATSVSAGSPEVMLPPFNNGLNKSPS-------------------------------------------------VGIGDASFPDGENALQLWSFDAVPISDSAY
A9NWS1_______________SAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPP-IKKETNNGKGSRKESSKKIKSCTTPKADHFQGFKMANPSNTHLNFNQKSPNPSFDDLGFLNSESQLHSICNRNFATKQSSCALPAYSTDFSDFDESEVENLVPQPASFEPMKNIHKRKGFDYFDSDTSSVSVDRSHFSWIPEVKTPEISSVPKAEAESNQCNFADISTPVATSVSVGSPEVVLSPFNNGLNKSPSVEDVASEKSPKLEESSQLEISEDLPSLESYPWLFQLPYFEGNLDQSLQGVGIGEASFPDGENALQLWNFDAVPISDSAY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
104			66	33	0.997452
105	66			33	0.997452
362	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain