SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59134

Length: 887 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene59134 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco085865; LOC100192878; K02883 large subunit ribosomal protein L18e	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	60s ribosomal protein l18	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L18e	IPR000039	-	0.0	82%
Blast2go	Ribosomal protein L18e/L15P	IPR021131	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
664		88		11	0.923564
856	88	11			0.923615
857	88	11			0.923615
858	77	11			0.968132
859	77	11			0.968132
860	11	11	44	11	1.0
861	12	12	50		1.0
863	50			50	1.0
864		50	16	33	1.0
865	16		83		0.994512
872	50	50			1.0
873		16	83		0.994512
876	50	50			1.0
877	83	16			0.994512
878		16	66	16	0.988819
879	20		80		0.9955
881		75	25		0.99649
883		66	33		0.997452
886	33	66			0.997452
887	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain