SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59119

Length: 1095 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59119

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=2 Tax=Picea sitchensis RepID=C0PSV4_PICSI	-	-	84%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	aspartate transaminase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	85%
Blast2go	Cysteine and methionine metabolism	00270	85%
Blast2go	Arginine and proline metabolism	00330	85%
Blast2go	Tyrosine metabolism	00350	85%
Blast2go	Phenylalanine metabolism	00360	85%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	85%
Blast2go	Carbon fixation in photosynthetic organisms	00710	85%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	85%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	85%
Blast2go	Biosynthesis of phenylpropanoids	01061	85%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	85%
Blast2go	Biosynthesis of plant hormones	01070	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	85%
Blast2go	metabolic process	GO:0008152	Biological Process	85%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Aspartate/other aminotransferase	IPR000796	-	85%
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	85%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	85%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	85%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	85%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSV4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 364 - 462

Fln protein: VVTLAVTQEKGLSACSSREGQSEESLSVAGRRIESLVRQFGATSMEGQSDRDGDLSFQPTAGSAVSAFQHLEQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRQAEELLIQDRSLYKEYLPITGLAQFNKLSAKLILGDGSPAIAEKRVATAQCLSGTGSLRVGAEFLAKHYSQRIIYIPVPTWGNHPKIFTLGGLSVKTYRYYDPRTRGLDYQGMLEDLQAAPPGAIVLLHACAHNPTGVDPTQDQWVGIRQLVRSKGLLPFFDSAYQGFASGSLDADAYSVRLFVGDGGECFIAQSYAKNMGLYGERVGALSIVRTSNLKTTMFSGINFVVKILCGSADIYYLNLSYS*

Protein Length: 365

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGAAGGGCTTATCGGCTTGTTCGTCTCGGGAGGGCCAGAGTGAGGAGAGCTTGAGTGTTGCGGGTCGGAGAATTGAATCGCTAGTGAGGCAATTCGGTGCGACTTCAATGGAGGGGCAGTCAGATAGAGATGGGGATCTTAGTTTTCAGCCAACTGCGGGTTCTGCAGTCTCTGCATTCCAACATTTGGAACAGGCTCCAGAGGATCCGATTCTTGGGGTGACAGTTGCCTATAACAAAGATCCGAGCCCTGTGAAATTGAATTTGGGTGTTGGGGCGTATCGAACTGAGGAAGGAAAACCTCTTGTCCTAAATGTTGTCAGACAAGCAGAGGAGCTCTTAATTCAAGACAGATCTCTATATAAGGAGTATTTGCCCATAACTGGTCTTGCGCAGTTCAACAAACTAAGTGCAAAGCTGATACTTGGTGATGGAAGTCCTGCTATTGCAGAGAAAAGGGTTGCCACTGCACAATGCTTGTCTGGAACAGGTTCACTCAGGGTTGGAGCTGAGTTTCTGGCAAAGCATTATAGCCAACGCATCATTTATATTCCAGTACCCACATGGGGCAATCATCCCAAGATCTTTACTCTTGGAGGATTGAGTGTGAAGACATATCGCTATTATGATCCTAGAACACGTGGGCTTGATTACCAAGGTATGCTTGAAGATTTACAAGCAGCTCCACCTGGAGCTATAGTGCTCCTTCATGCATGTGCACATAATCCCACTGGTGTAGATCCTACACAAGACCAATGGGTAGGAATTCGGCAGTTAGTAAGATCAAAAGGTCTGCTGCCATTTTTCGACAGTGCTTATCAGGGATTTGCCAGTGGAAGCCTTGATGCAGATGCATACTCTGTTCGTTTGTTTGTAGGAGATGGTGGTGAATGTTTTATTGCTCAGAGTTATGCAAAGAATATGGGGCTGTATGGGGAGCGTGTGGGTGCTCTTAGTATTGTAAGGACTTCTAACCTCAAAACTACTATGTTTTCCGGGATAAATTTTGTTGTAAAAATaTTATGTGGCTCAGCTGACATATACTATTTGAACTTGTCATATAGTTAAAT

Fln Alignment:

sp_v1.1_unigene59119___KGLSACSSREGQSEESLSVAGRRIESLVRQFGATSMEGQSDRDGDLSFQPTAGSAVSAFQHLEQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRQAEELLIQDRSLYKEYLPITGLAQFNKLSAKLILGDGSPAIAEKRVATAQCLSGTGSLRVGAEFLAKHYSQRIIYIPVPTWGNHPKIFTLGGLSVKTYRYYDPRTRGLDYQGMLEDLQAAPPGAIVLLHACAHNPTGVDPTQDQWVGIRQLVRSKGLLPFFDSAYQGFASGSLDADAYSVRLFVGDGGECFIAQSYAKNMGLYGERVGALSIV-RTSNLKTTMFSGINFVVKILCGSADIY
C0PSV4_______________KNSSACSFEEKESDKSLSVAGRRIGSLVRQLAATSMEGQADRDGDLRFQPTAGSAVSAFQHLEQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLDVVRQAEELLIQDRSRYKEYIPIAGLVEFNKLSAKLILGDGSPAIGEKRVATAQCLTGTGSLRVGAEFLSKHYSQHIIYIPVPTWGNHPKIFNLGGLSVKTYRYYDPRTSGLDYEGMLEDLHAAPPGAIVLLHACAHNPTGVDPTQDQWEGIRQLIRLKGLLPFFDSAYQGFASGSLDADAYSVRLFVGDGGECLIAQSFAKNMGLYGERVGALSIVCRSATVATRVESQLKLVIRPMYSSPPIH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
545	90		10		0.90298
930			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain