SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59107

Length: 466 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene59107
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCTTTTGTTGAGGGAGCCGGAAGATTATGAGAAGCGCGCTGTGGTTTATAAATCTGAGAAGAGACTGAAGCTTGAGCAAGATGGGTTTAGGATTCTAGGGAACACGGGTGATCAGTGGAGCGATCTGACTGGATATTCTGTTGGGCAAAGGACTTTCAAGCTGCCCAATCTTCTGTATTACGTTGCCTGATATTAATGTTTTGTTTGTTGCATTGAGACATGGAAAGTGACCATACATCAGTTCTGATTGGATTGTCCTACATATTTTACTCAGAAGTGCTGTCATTGATATGCATAACTCTGTACTGAAGATCAAAAACATATTTTCTTTTATGTGTATTTCTTTGTCCTGAAATCCAATATTTTGGTAAATTTACGTAACATAAAATTATTAATTACATCATTCAAAACTTTTAATTGGCTCC

Ace file of the UniGene sp_v1.1_unigene59107

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acid phosphatase (Fragment) n=1 Tax=Picea abies RepID=B2KZJ5_PICAB	-	-	4.0e-16	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	acid phosphatase	-	-	2.97051e-21	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Acid phosphatase (Class B)	IPR005519	-	2.97051e-21	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPL9

Fln msg: your sequence is shorter than subject: 77 - 297

Fln protein: RRDLGCHVVTLAVTLLLREPEDYEKRAVVYKSEKRLKLEQDGFRILGNTGDQWSDLTGYSVGQRTFKLPNLLYYVA*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCTTTTGTTGAGGGAGCCGGAAGATTATGAGAAGCGCGCTGTGGTTTATAAATCTGAGAAGAGACTGAAGCTTGAGCAAGATGGGTTTAGGATTCTAGGGAACACGGGTGATCAGTGGAGCGATCTGACTGGATATTCTGTTGGGCAAAGGACTTTCAAGCTGCCCAATCTTCTGTATTACGTTGCCTGA___TATTAATGTTTTGTTTGTTGCATTGAGACATGGAAAGTGACCATACATCAGTTCTGATTGGATTGTCCTACATATTTTACTCAGAAGTGCTGTCATTGATATGCATAACTCTGTACTGAAGATCAAAAACATATTTTCTTTTATGTGTATTTCTTTGTCCTGAAATCCAATATTTTGGTAAATTTACGTAACATAAAATTATTAATTACATCATTCAAAACTTTTAATTGGCTCC

Fln Alignment:

sp_v1.1_unigene59107___LLLREPEDYEKRAVVYKSEKRLKLEQDGFRILGNTGDQWSDLTGYSVGQRTFKLPNLL
A9NPL9_______________LLLRDPEDYEKSAMIYKSERRLKIEQDGFRIVGNSGDQWSDLTGYAVGDRTFKLPNPL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
257		25		75	1.0
267	26		73		1.0
276	26	73			1.0
281		73		26	1.0
286		27	72		1.0
287		27		72	1.0
292	72		27		1.0
305	82		17		1.0
306		68	18		1.0
308			13	86	0.999973
317		75		25	1.0
325		75		25	1.0
362	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain