SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59003

Length: 2140 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene59003
CGTCGTGACCTTGGCTGTCACTCAACACTCTTCGTTGGAGCAAACCGATCAGACTAGTTCGGATCTTGCTCCGCGAGCGCTCCCTTACATCTGGGTCTTTAGTTCTCATTTAGGTTTAGCCAAAATCCGCGGCTTTCCCTTAGATCTGCCTGTTTTCTCCCCTGTCTCTGTGCAGCAATGGCGCTTTACACTGAGAAAACGGTGTCCGGAAGGGAATACAAGGTTAAGGACATGTCTCAGGCCGACTTCGGAAGGCTGGAGATCGAGTTGGCTGAAGTTGAGATGCCTGGACTGATGGCCTGCCGGGTCGAGTTCGGACCTGCCCAGCCCTTCAAGGGCGCCCGGATCACGGGTTCCCTCCACATGACTATCCAAACCGCTGTTCTCATCGAGACTCTCACCGCCCTTGGAGCCGAGGTGAGATGGTGCTCCTGCAACATATTCTCCACTCAGGACCATGCCGCGGCCGCCATCGCTCGCGATAGCGCGGCGGTGTTTGCCTGGAAGGGGGAAACACTGCAGGAGTACTGGTGGTGCACCGAGAGGGCTCTTGACTGGGGCCCTGGTGGCGGCCCTGATCTAATTGTTGACGATGGCGGTGACACTRCACTTCTGATACATGAGGGAGTGAAGGCCGAGGAAGAGTTTGCCAAGACTGGGAAGGTGCCAGATCCGTCTTCTACCACCAATGTGGAGTTTCAGATCGTGTTGGAGTTGATCAAGGAAAGCCTCAAGGTGGATCCATTGAGGTATCACAGAATGAAGGATAGAATTGTTGGTGTGTCTGAGGAGACTACTACTGGGGTTAAGAGGCTTTACCAGATGCAGAATGCCGGGTCCCTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACAAAGAGCAAGTTTGACAACTTGTATGGTTGTAGGCACTCTCTCCCAGACGGTCTTATGAGAGCCACAGATGTCATGATTGCTGGTAAGGTTGCTGTTGTTTGTGGGTTTGGAGATGTTGGCAAGGGTTGTGCTGCAGCCTTGAAAGTCGCGGGAGCTAGGGTCATTGTTACAGAGATTGATCCTATCTGTGCCCTGCAAGCTCTTATGGAAGGCCTTCCTGTCCTCACGCTTGAGGATGTAGTTAGCACTGCTGATATCTTTGTGACAACCACTGGCAACAAGGACATCATCATGGTAGATCACATGCGGAAAATGAAGAACAATGCCATTGTTTGCAACATCGGTCACTTTGACAACGAGATTGATATGCAAGGCCTTGAAACTTTCCCTGGCGTTAAGAAGATTACCATCAAGCCTCAGACTGACAGGTGGGTGTTCCCTGACACCAACAGTGGCATCATTGTTCTTGCAGAGGGGCGTCTGATGAACTTGGGTTGTGCAACTGGCCACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTCATTGCTCAGTTAGAGCTCTGGAATGAGAAGAAATCAGGGAAGTATGAGAAGAAGGTCTATGTGCTGCCTAAGCATCTAGATGAGAAGGTGGCTGCTCTGCACTTGCCCAAGTTGGGTGCCAAGCTAACAAAGCTTTCTCCTGATCAGGCAGAGTATATCAATGTGCCTATTGAGGGGCCTTACAAGCCTGCTCACTACCGATACTGAAAAGATCTGACATTTGGGACGGCTTGTTGGACGAGTAGCAAAGGTCCTCGCTGTTTGCAAATAAAAGAAACTGTAGGATTTATTTTTGGCAGCTCTGTTGTTTTAAGGGACCTTACAAGCCTCCTGACTACATACTGAAGAGATGACATTTTGGGTGAGACCTGCTCGGCGAGTATCAAGTTGCAATGCACCTCGACATATAAAAATCTGGCCTCTCTTTGTCGGCATCTCCATTGTTTGGGTAGAATTATAATAAAATTTTGCTATCGCTTGTATGCGTGGCTGCTGAATTTCTTGCAGCATCACATCAAGCATCTCGTTTTAATACTGGTATATGGTTTAATAGTTTATTAGAGTTCGTATGGGAGGTTTCTGCCAATGTGGCATTTGTATTGCTCAAAATTCAGTTTGGAAGCAAAAATATAAGGATGCCTCTGGGTTTCTATCCAGCACTGGCATGTTATGAATCAAATGAATTTCAGGTCAAGGACCGCAATTTTCACAC

Ace file of the UniGene sp_v1.1_unigene59003

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenosylhomocysteinase 1 n=3 Tax=core eudicotyledons RepID=SAHH1_ARATH	-	-	87%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	s-adenosyl-l-homocysteine hydrolase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosylhomocysteinase.	EC:3.3.1.1	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	95%
Blast2go	methylation-dependent chromatin silencing	GO:0006346	Biological Process	95%
Blast2go	copper ion binding	GO:0005507	Molecular Function	95%
Blast2go	adenosylhomocysteinase activity	GO:0004013	Molecular Function	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUB8

Fln msg:

Fln protein: MALYTEKTVSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTALLIHEGVKAEEEFAKTGKVPDPSSTTNVEFQIVLELIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNAGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGFGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAKLTKLSPDQAEYINVPIEGPYKPAHYRY*

Protein Length: 487

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACTCTTCGTTGGAGCAAACCGATCAGACTAGTTCGGATCTTGCTCCGCGAGCGCTCCCTTACATCTGGGTCTTTAGTTCTCATTTAGGTTTAGCCAAAATCCGCGGCTTTCCCTTAGATCTGCCTGTTTTCTCCCCTGTCTCTGTGCAGCA_-_ATGGCGCTTTACACTGAGAAAACGGTGTCCGGAAGGGAATACAAGGTTAAGGACATGTCTCAGGCCGACTTCGGAAGGCTGGAGATCGAGTTGGCTGAAGTTGAGATGCCTGGACTGATGGCCTGCCGGGTCGAGTTCGGACCTGCCCAGCCCTTCAAGGGCGCCCGGATCACGGGTTCCCTCCACATGACTATCCAAACCGCTGTTCTCATCGAGACTCTCACCGCCCTTGGAGCCGAGGTGAGATGGTGCTCCTGCAACATATTCTCCACTCAGGACCATGCCGCGGCCGCCATCGCTCGCGATAGCGCGGCGGTGTTTGCCTGGAAGGGGGAAACACTGCAGGAGTACTGGTGGTGCACCGAGAGGGCTCTTGACTGGGGCCCTGGTGGCGGCCCTGATCTAATTGTTGACGATGGCGGTGACACTgCACTTCTGATACATGAGGGAGTGAAGGCCGAGGAAGAGTTTGCCAAGACTGGGAAGGTGCCAGATCCGTCTTCTACCACCAATGTGGAGTTTCAGATCGTGTTGGAGTTGATCAAGGAAAGCCTCAAGGTGGATCCATTGAGGTATCACAGAATGAAGGATAGAATTGTTGGTGTGTCTGAGGAGACTACTACTGGGGTTAAGAGGCTTTACCAGATGCAGAATGCCGGGTCCCTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACAAAGAGCAAGTTTGACAACTTGTATGGTTGTAGGCACTCTCTCCCAGACGGTCTTATGAGAGCCACAGATGTCATGATTGCTGGTAAGGTTGCTGTTGTTTGTGGGTTTGGAGATGTTGGCAAGGGTTGTGCTGCAGCCTTGAAAGTCGCGGGAGCTAGGGTCATTGTTACAGAGATTGATCCTATCTGTGCCCTGCAAGCTCTTATGGAAGGCCTTCCTGTCCTCACGCTTGAGGATGTAGTTAGCACTGCTGATATCTTTGTGACAACCACTGGCAACAAGGACATCATCATGGTAGATCACATGCGGAAAATGAAGAACAATGCCATTGTTTGCAACATCGGTCACTTTGACAACGAGATTGATATGCAAGGCCTTGAAACTTTCCCTGGCGTTAAGAAGATTACCATCAAGCCTCAGACTGACAGGTGGGTGTTCCCTGACACCAACAGTGGCATCATTGTTCTTGCAGAGGGGCGTCTGATGAACTTGGGTTGTGCAACTGGCCACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTCATTGCTCAGTTAGAGCTCTGGAATGAGAAGAAATCAGGGAAGTATGAGAAGAAGGTCTATGTGCTGCCTAAGCATCTAGATGAGAAGGTGGCTGCTCTGCACTTGCCCAAGTTGGGTGCCAAGCTAACAAAGCTTTCTCCTGATCAGGCAGAGTATATCAATGTGCCTATTGAGGGGCCTTACAAGCCTGCTCACTACCGATACTGA___AAAGATCTGACATTTGGGACGGCTTGTTGGACGAGTAGCAAAGGTCCTCGCTGTTTGCAAATAAAAGAAACTGTAGGATTTATTTTTGGCAGCTCTGTTGTTTTAAGGGACCTTACAAGCCTCCTGACTACATACTGAAGAGATGACATTTTGGGTGAGACCTGCTCGGCGAGTATCAAGTTGCAATGCACCTCGACATATAAAAATCTGGCCTCTCTTTGTCGGCATCTCCATTGTTTGGGTAGAATTATAATAAAATTTTGCTATCGCTTGTATGCGTGGCTGCTGAATTTCTTGCAGCATCACATCAAGCATCTCGTTTTAATACTGGTATATGGTTTAATAGTTTATTAGAGTTCGTATGGGAGGTTTCTGCCAATGTGGCATTTGTATTGCTCAAAATTCAGTTTGGAAGCAAAAATATAAGGATGCCTCTGGGTTTCTATCCAGCACTGGCATGTTATGAATCAAATGAATTTCAGGTCAAGGACCGCAATTTTCACAC

Fln Alignment:

sp_v1.1_unigene59003___MALYTEKTVSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTALLIHEGVKAEEEFAKTGKVPDPSSTTNVEFQIVLELIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNAGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGFGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAKLTKLSPDQAEYINVPIEGPYKPAHYRY
A9NUB8_______________MALLAEKTVSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAASAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEEFAKTGKVPDPASTTNVEFQIVLALIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNSGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAAMKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMLDHMRKMKNNAIVCNIGHFDNEIDIQGLENFPGVKKITIKPQTDRWVFPDTKSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKSGKYEKKVYVLPKHLDEKVAALHLPKLGAKLTKLSPDQAEYINVPVEGPYKPAHYRY

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
175	8			83	0.950482
179	83			16	0.999994
186	8		83		0.950482
403	9			90	0.90298
407		90	9		0.90298
415		10	90		0.991528
419		90		10	0.991528
429		10	90		0.991528
431			10	90	0.991528
433		10	90		0.991528
434		10		90	0.991528
435	10		90		0.991528
438	11	88			0.992527
439	11	88			0.992527
460		12	87		0.993502
485	14	85			0.994477
487		85		14	0.994477
490			16	83	0.995451
491	83			16	0.995451
493	16	83			0.995451
494		16	83		0.995451
495	16	83			0.995451
499		20	80		0.996423
700			25	75	0.996473
875			16	83	0.994512
1026	14			85	0.993533
1348			25	75	1.0
1482			75	25	0.996473
1483			25	75	0.996473
1484	75		25		0.996473
1485			25	75	0.996473
1557	25		75		0.996473
1582	16	83			0.994512
1585	83		16		0.994512
1586			16	83	0.994512
2058	14			85	0.993533
2059	14			85	0.993533
2065			85	14	0.993533
2066	14	85			0.993533
2087		14	85		0.993533
2119	16			83	0.994512
2121	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain