SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58995

Length: 408 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene58995
CGTCGTGACCTTGGCTGTCATTGTTGTGGGAGGAAAGGAAGCAGCCATGTCGAAGAGAGGTACAGATCCTAACCTTTCAATCCAATTTGAATGAGTTCTGAATGTAAAATTTCTTATTCATTACAATCTGTCATCCGTGCAGGGCGCGGAGGGAGCGCTGGAAACAAGTTCAGGATGTCACTGGGTCTCCCAGTGGCGGCCACGGTGAATTGCGCAGACAACACAGGTGCCAAGAACTTATACATCATCAGTGTTAAGGGAATAAAGGGTCGTCTCAACAGGCTTCCTGCAGCATGCGTCGGAGATATGGTCATGGCTACAGTCAAGAAGGGAAAACCTGATCTCCGAAAGAAGGTCATGCCTGCTGTCATTGTTCGTCAGAGGAAGCCGTGGAGGCGAAAGGACGGT

Ace file of the UniGene sp_v1.1_unigene58995

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein n=1 Tax=Cucumis sativus RepID=B0F825_CUCSA	-	-	4.06377e-44	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	60s ribosomal protein l23	-	-	7.00649e-45	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	7.00649e-45	97%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	7.00649e-45	97%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L14b/L23e	IPR000218	-	7.00649e-45	97%
Blast2go	Ribosomal protein L14 domain	IPR023571	-	7.00649e-45	97%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS49

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 106 - 140

Fln protein: MSSECKISYSLQSVIRAGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDG

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCATTGTTGTGGGAGGAAAGGAAGCAGCCATGTCGAAGAGAGGTACAGATCCTAACCTTTCAATCCAATTTGA_-_ATGAGTTCTGAATGTAAAATTTCTTATTCATTACAATCTGTCATCCGTGCAGGGCGCGGAGGGAGCGCTGGAAACAAGTTCAGGATGTCACTGGGTCTCCCAGTGGCGGCCACGGTGAATTGCGCAGACAACACAGGTGCCAAGAACTTATACATCATCAGTGTTAAGGGAATAAAGGGTCGTCTCAACAGGCTTCCTGCAGCATGCGTCGGAGATATGGTCATGGCTACAGTCAAGAAGGGAAAACCTGATCTCCGAAAGAAGGTCATGCCTGCTGTCATTGTTCGTCAGAGGAAGCCGTGGAGGCGAAAGGACGGT

Fln Alignment:

sp_v1.1_unigene58995___RAGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDG
A9NS49_______________KRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain