SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58987

Length: 1238 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58987

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enoyl-CoA hydratase/isomerase family protein (EC:5.3.3.8)	-	-	4.0e-37	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dodecenoyl-CoA isomerase.	EC:5.3.3.8	-	0.0	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid catabolic process	GO:0009062	Biological Process	0.0	65%
Blast2go	dodecenoyl-CoA delta-isomerase activity	GO:0004165	Molecular Function	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU1

Fln msg:

Fln protein: MCSLEKRGRVYILTLLGEGDHRFNPSTIDAISAALQEVNDSPDAGALVTTNEGRFFSNGLDLQWISQNPEDHLSTIRIKFENLLAAFMRVKVPTIAAICGHAAAGGFILALAHDYRFMRGDRSVLYMNELDIGMKLPRSLLAVIRSKLSPGTLRDVALGARKFSAQMALEGGITDSVFADSPQTLEAAVGEAQKLAGRGWKKEIYSQLRLGVFPGVVEELDAHREPYLFPASAKL*

Protein Length: 237

Fln nts: GGAGATTAGGTAACAGAATGATGGCAATTCCTATTTCCACTTCTATAGCAAAGTTAATGGTGTTTGACATGCAAGAACAATTGCAAGTTACCTTGCATTAACATGCTAAAGTTGGGGAAATATAAATGCAAAAACAACTCTTATTCCCATGTGGATATCAGACAGCATTAACTTTGCTTCACTGCACGTAGATTGGGGATTGTCCAATTGGAGCGATT_-_ATGTGCAGCCTGGAGAAGAGAGGAAGGGTGTACATCCTCACTCTGTTGGGAGAGGGAGATCACAGGTTCAATCCCTCCACCATCGATGCCATTTCTGCCGCACTGCAAGAGGTCAATGATTCCCCAGACGCGGGGGCCCTCGTGACCACAAACGAGGGCAGATTCTTTTCAAACGGCCTCGACCTTCAATGGATATCTCAGAATCCAGAAGACCACTTGAGCACAATCAGAATCAAGTTCGAAAACCTGCTGGCCGCCTTCATGAGGGTTAAGGTCCCCACCATCGCCGCGATCTGTGGGCACGCTGCGGCGGGGGGTTTTATTCTGGCCCTGGCGCACGACTACAGGTTCATGAGAGGAGACCGTTCTGTGCTCTACATGAATGAGCTCGACATCGGGATGAAGCTTCCTAGGAGTCTTCTGGCCGTCATACGGAGCAAGCTCTCGCCCGGAACCCTAAGGGATGTGGCATTGGGCGCCCGCAAGTTTAGTGCTCAGATGGCTCTGGAAGGTGGGATCACGGATTCTGTTTTCGCGGATTCTCCTCAGACATTGGAGGCCGCTGTTGGCGAAGCTCAGAAATTGGCGGGCAGGGGTTGGAAGAAGGAGATTTACAGTCAACTCAGGTTGGGAGTTTTCCCGGGCGTTGTTGAAGAGCTTGATGCCCATCGGGAACCCTATCTTTTTCCTGCCTCTGCCAAGCTGTGA___TTATGGGGGTTTTGGTTTCTGTCTGTGCTTGTAGGGTTAGAGATTCAAATCCCTCTGCAACCATGGGGTTTTAATTCGATTTGTGTGTCTATGAACGGTTTCTCTAAATAATTTGGGGTCTCTCAGCCTCCGGCAATCATTGCTGACAGGAAATGCAGAGATGCACAAATGTCTGCAATAATCTCTAAATATTTTTATAGACCGTTTAATTCCTGAATGCAGTGACATCAATAATAAGCTCTGGTTCTGGTTATACTCCATTCATAAAGGAGACCAATGCCACACATCATATTTTCATCATCCAGGTTTGCC

Fln Alignment:

sp_v1.1_unigene58987___MCSLEKRGRVYILTLLGEGDHRFNPSTIDAISAALQEVNDSPDAGALVTTNEGRFFSNGLDLQWISQNPEDHLSTIRIKFENLLAAFMRVKVPTXXXXXXXXXXXXXXLALAHDYRFMRGDRSVLYMNELDIGMKLPRSLLAVIRSKLSPGTLRDVALGARKFSAQMALEGGITDSVFADSPQTLEAAVGEAQKLAGRGWKKEIYSQLRLGVFPGVVEELDAHREPYLFPASAKL
A9NYU1_______________MCNLEKRGRVYILTLLGDGDHRFNPSTIDAISAALKEVQDSPDAGALVTTNQGRYFSNGLDLQWISQNPDAHLSTIRIKFENLLASFIRLRVPTIAAICGHAAAGGFIVALAHDYRFMRGDRSVLYMSELDIGMKLPRSLMAVIRSKLLPGTLRDVVLGARKFSAQMALEGGIVDSVYADSPQTLEAAVSEAQKLAGRGWKKEIYSELRLGAFPGVLEELDAHRDPYLFPVSSKL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
772	12	87			0.992554
775		87	12		0.992554
776	87		12		0.992554
780	88		11		0.991528
782			11	88	0.991528
783			88	11	0.991528
786		11	88		0.991528
787		11	88		0.991528
788		88		11	0.991528
789		88		11	0.991528
796		11	88		0.991528
797	11		88		0.991528
799			88	11	0.991528
800	88	11			0.991528
1024		11		88	0.923564
1191		14		85	0.993533
1199		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain