SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58980

Length: 2124 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene58980
CGTCGTGACCTTGGCTGTCACTCAATTGTGATTCCGGTTCTTCTTTGCAGTTGCAACTGATTACCGAATATYGGGAAACAGTACTGTGGAGTGGGGTTTATTTTGAAAATCAACCGAAAATGGCTCTGAGCAGCGCTACTGATTCTGATGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCAGGAATCCTTGCCTCGGTTTCAAATTCCGAGTAGGTCGATTCCCAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCACCACATGGATGGAACCAGAATGTGATAAGCTCATCATGCAGGCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACTACAGAATTGCAGAATCGATGCGTGAACATTATAGCCAATCTGTTTAACGCCCCACTTGGCGATGGAGAGGAAGCTGTTGGTGTGGGCACGGTTGGATCTTCAGAGGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAAGCGCAAGGCAGAGGGGAAGCCGTATGACAAGCCAAACATTGTGACAGGTGCAAATGTCCAGGTGTGCTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAATTTCTCCAAAGGTGCCAGCCAAATAATTGCGCAATATTACCAGCTCATACGTCTAGGGTTCGAGGGCTACCGGAATATCATGGGCAACTGCGCGGCAAACGCCAAGGCTCTGTCAGATGGTTTGGTGAGGACCGGGCGGTTCAACATTCTGTCGAAGGAGATCGGGGTCCCTCTGGTGGCGTTTTCGCTAAAGGACAGTAGCAGGCACGATGAGTATGAGATTTCTGACCACCTGAGAAGGTTTGGTTGGATCGTGCCCGCGTACACCATGGCTCCCGACGCACAAGAGGTGAAGCTTCTGCGTGTGGTGGTTCGCGAAGATTTCAACCGGAGCCTGGCAGAACGACTGGTTCATGACATCGAGAAGGTGTTGCATGAACTTGACACGCTTCCTTCAAAGATAGCGAGGGAAGTGGTTGCGTCTCTGGTAGATGGCCATCCAGAGCTCAAAGAAGTCAAAGACCTAGGTATAGATGTCACCCAGTTTAAGTCCTCTGCTGTGTTCAACGAAATCGTTAACTCCCAGAAGGCCGTAAAGGCATGGAAGAAATTTGTTGCGCAGAAGGCCAATCGTGTTTGCTGAGGAGCCCCATTCAAATGGCTGAAAGTTTGAAGTTTTTGTTTTGTTATGCTCATGGTCGTTGCACGATGCGACGTCCGCACTATTATCATTAATTATTTTTGTTTTGTTATCCTCATCGTCGTTGCACGATGCGACCTCCGCACTATTACCATTATTTTACTTCCATTCAACCTGTAGCTGTCTCTGTATAAGAGATTTGTCAAAGCTGAGTTTATAGGTGGCTTGCACGACTTTTGCAGGTCCAGTAATGAGAAAAATAGTTTTGTTCTTCACGCGTATGCTTTAGAACATTTCAGCGCGATTTCTGTGTTCCAAAAATAATAATGTCACATCTATGTGCCAATTTCACCGACTCTTGAATACGATTGATACTGTATGTCATGGAAAAATGTTCCTGCATATTTGGTGGCAGACATGATCTCTTCACCAAAAACAGACACGTCTCTCCTCCGTAACAGCAATGAACACAAGATTT

Ace file of the UniGene sp_v1.1_unigene58980

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	97%
FL-Next	tr=Glutamate decarboxylase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	glutamate decarboxylase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	87%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A0EJ89

Fln msg:

Fln protein: MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGATTCCGGTTCTTCTTTGCAGTTGCAACTGATTACCGAATATtGGGAAACAGTACTGTGGAGTGGGGTTTATTTTGAAAATCAACCGAAA_-_ATGGCTCTGAGCAGCGCTACTGATTCTGATGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCAGGAATCCTTGCCTCGGTTTCAAATTCCGAGTAGGTCGATTCCCAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCACCACATGGATGGAACCAGAATGTGATAAGCTCATCATGCAGGCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACTACAGAATTGCAGAATCGATGCGTGAACATTATAGCCAATCTGTTTAACGCCCCACTTGGCGATGGAGAGGAAGCTGTTGGTGTGGGCACGGTTGGATCTTCAGAGGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAAGCGCAAGGCAGAGGGGAAGCCGTATGACAAGCCAAACATTGTGACAGGTGCAAATGTCCAGGTGTGCTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAATTTCTCCAAAGGTGCCAGCCAAATAATTGCGCAATATTACCAGCTCATACGTCTAGGGTTCGAGGGCTACCGGAATATCATGGGCAACTGCGCGGCAAACGCCAAGGCTCTGTCAGATGGTTTGGTGAGGACCGGGCGGTTCAACATTCTGTCGAAGGAGATCGGGGTCCCTCTGGTGGCGTTTTCGCTAAAGGACAGTAGCAGGCACGATGAGTATGAGATTTCTGACCACCTGAGAAGGTTTGGTTGGATCGTGCCCGCGTACACCATGGCTCCCGACGCACAAGAGGTGAAGCTTCTGCGTGTGGTGGTTCGCGAAGATTTCAACCGGAGCCTGGCAGAACGACTGGTTCATGACATCGAGAAGGTGTTGCATGAACTTGACACGCTTCCTTCAAAGATAGCGAGGGAAGTGGTTGCGTCTCTGGTAGATGGCCATCCAGAGCTCAAAGAAGTCAAAGACCTAGGTATAGATGTCACCCAGTTTAAGTCCTCTGCTGTGTTCAACGAAATCGTTAACTCCCAGAAGGCCGTAAAGGCATGGAAGAAATTTGTTGCGCAGAAGGCCAATCGTGTTTGCTGA___GGAGCCCCATTCAAATGGCTGAAAGTTTGAAGTTTTTGTTTTGTTATGCTCATGGTCGTTGCACGATGCGACGTCCGCACTATTATCATTAATTATTTTTGTTTTGTTATCCTCATCGTCGTTGCACGATGCGACCTCCGCACTATTACCATTATTTTACTTCCATTCAACCTGTAGCTGTCTCTGTATAAGAGATTTGTCAAAGCTGAGTTTATAGGTGGCTTGCACGACTTTTGCAGGTCCAGTAATGAGAAAAATAGTTTTGTTCTTCACGCGTATGCTTTAGAACATTTCAGCGCGATTTCTGTGTTCCAAAAATAATAATGTCACATCTATGTGCCAATTTCACCGACTCTTGAATACGATTGATACTGTATGTCATGGAAAAATGTTCCTGCATATTTGGTGGCAGACATGATCTCTTCACCAAAAACAGACACGTCTCTCCTCCGTAACAGCAATGAACACAAGATTT

Fln Alignment:

sp_v1.1_unigene58980___MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC
A0EJ89_______________MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
232			33	66	0.99834
314	16			83	0.995451
316			16	83	0.995451
318			16	83	0.995451
562	28		71		1.0
744		10		90	0.90298
1160			88	11	0.991528
1499	88			11	0.999937
1501	88		11		0.999937
1502			11	88	0.999937
1688	18		81		0.999994
1737			44	55	1.0
1780	12			87	0.992554
2046	25	75			0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain