SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58978

Length: 1187 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58978 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydroxyproline-rich glycoprotein family protein	-	-	7.00649e-44	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	stress responsive protein	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ricin B-related lectin	IPR008997	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU64

Fln msg:

Fln protein: MAYYYGEYDSCQERNQSIYDSYGYQQQPPRRPCDPCPNAIGGGYGDNEYGGPAAYNKYNAGGGCLISGQQIIPQGQIVRVCNKANPDYALAIRDGRAVMAFYNPNDPTMQWVKDESWGNQMRDQVGHPAFALVNKATGQALRHAIAECQEVLLTQYEGPSSYDENVLWSESEDMGYGYRTIRMANNIRLNLDAFQGDKRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY*

Protein Length: 230

Fln nts: ATTGGGATGGGGAACAACAACTCATATCTTAGGCTATCGAGGTGAGTCCCTTTTCTTTGTTCTAAGAACAATTGGCATTTGTCATATTGTGAATTAATTCATCC_-_ATGGCATATTACTATGGGGAGTATGATTCATGCCAAGAGAGGAACCAGAGTATTTACGACTCCTATGGTTATCAGCAGCAGCCACCACGTCGCCCTTGCGACCCATGTCCTAATGCAATAGGAGGAGGCTATGGAGATAATGAATATGGAGGCCCTGCAGCTTATAACAAGTATAATGCAGGAGGCGGCTGCCTGATAAGCGGCCAGCAAATAATTCCACAAGGCCAGATCGTGAGGGTGTGCAATAAGGCCAATCCTGACTACGCTTTGGCTATCAGAGATGGCCGGGCCGTCATGGCCTTCTACAATCCCAATGATCCCACAATGCAATGGGTGAAGGATGAAAGCTGGGGTAACCAAATGAGGGACCAAGTGGGTCATCCTGCTTTTGCTCTGGTGAACAAAGCCACGGGTCAAGCTCTCCGCCATGCCATTGCTGAATGTCAGGAGGTGCTGCTCACTCAGTATGAGGGTCCCTCTTCTTATGATGAGAACGTGCTGTGGAGTGAGAGTGAGGACATGGGTTATGGGTATCGAACAATAAGGATGGCCAACAACATTCGACTCAACCTCGACGCATTTCAGGGAGACAAGAGGAGCGGAGGCATCAGAGATGGCACTCGTGCTGTGCTGTGGAAATGGAACAAGCAGGACAACCAGCTCTGGAAGCTCTCCCCTTGCTATTAA___TTGGTACATGCATATAATTATAATATAGTATTATAGTGTTACTATTGAGATGGCCGATATCAGTAGGAGGCAATGCCTAGCATGGTATAGAAGCTACCACATGGAAACGAAAGGATAGGATGTCTGATTATTATAGTAAGATCAGAAAATATAGACCAGAGACGTCTGTGTGCCTATGTAGCTTTTTTATCATCTTATAAATAAATAAAGGCGTTTCATACTGTCAAATTTATGAGGTCACTCATCTTGCTTGCTGTTTATGTTCACAGTATGCGATTGTGTTAACGTAATATGAATCGAGTTAGCATGGTTTACAATACTATGATTGTTATGCATAATTTCTCCCGTGATTGTGGATTACAAATGGTCTAATAGAGACTTTGCTGTTATTGACCT

Fln Alignment:

sp_v1.1_unigene58978___YYGEYDSCQERNQSIYDSYGYXXXXXXXXXXXXPNAIXXXXXXXXXXGPAAYNKYNAGGGCLXXXXXXXXXXXIVRVCNKANPDYALAIRDGRAVMAFYNPNDPTMQWVKDESWGNQMRDQVGHPAFALVNKATGQALRHAIAECQEVLLTQYEGPSSYDENVLWSESEDMGYGYRTIRMANNIRLNLDAFQGDKRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY
A9NU64_______________YYGEYDPCQERNAS--GSGFQQQQLARPPCDPCQNATQEGYGFNEYGDRAACNKFNAGGGCMRNSQQIIPQGQIVRVCSKANPDYALAIRDGRAVMVFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAECQEVLLTQYEGASTYDENVLWSESEDMGYGYRTVRMANNIGLNLDAFQGDRRNGGIRDGTRAVLWKWNKQDNQLWKLSPCY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
807		10		90	0.90298
810		11	88		0.991528
827		12		87	0.992554
830			87	12	0.992554
869		14		85	0.993533
870		14	85		0.993533
871		14	85		0.993533
872	85	14			0.993533
878		16		83	0.994512
880	16		83		0.994512
925	85		14		0.993533
1032		10		90	0.903503
1037	88	11			0.923564
1181		75	12		0.975348
1182	14	85			0.993533
1184		87		12	0.992556
1186		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain