SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58973

Length: 1490 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58973 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	afc, putative (EC:2.7.12.1)	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	86%
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 315 - 459

Fln protein: WGTFRCVFLVDGLVIKTLRTFGQVLECWDRKSKDLVAIKIVRGLQKYREAAMIEVDVLRKVGKYDRNGTRCVQMREWFDYRNHTCIVFEKLGPSLYDFLRKNNYSPFPIDLVREVGRQLLESVAYMHELKLVHTDLKPENILFVSSDSVKVPDCKGVKGFPDYFKRLPKSSAIKLIDFGSTTFEDQDHTSVVSTRHYRAPEVILGLGWNYSCDIWSVGCILVELCSGETLFQTHENLEHLAMMERVLGPxxxxxxxxxxxLVMKHADNSAGLFIDLLQGLLNYEPSERLKASEALRHPFFREGSRRYDYSAYTS*

Protein Length: 316

Fln nts: ATGGGGAACATTTAGATGCGTTTTTTTGGTAGACGGCTTGGTCATCAAGACTCTTAGAACATTTGGTCAAGTGTTGGAATGTTGGGATCGAAAATCAAAGGATCTTGTGGCCATTAAAATCGTTCGTGGATTACAAAAGTATCGAGAGGCTGCAATGATAGAAGTCGATGTACTTCGTAAAGTTGGCAAATACGACAGAAATGGCACACGTTGTGTGCAGATGCGCGAGTGGTTTGACTACCGGAATCACACTTGCATAGTCTTTGAGAAGCTTGGCCCAAGCTTATATGATTTCCTACGCAAAAACAATTACAGCCCATTTCCCATTGATCTCGTACGGGAGGTTGGAAGGCAACTGTTGGAATCTGTAGCATATATGCATGAGTTGAAACTCGTTCACACGGATTTAAAGCCTGAAAATATACTTTTTGTTTCTTCGGACTCTGTAAAGGTTCCAGATTGCAAGGGTGTGAAGGGATTTCCAGATTACTTTAAAAGGTTGCCAAAGTCAAGTGCAATAAAGTTAATTGATTTTGGAAGCACCACATTTGAGGATCAAGATCACACCTCAGTGGTCTCTACAAGGCATTATCGAGCTCCTGAAGTTATTTTGGGACTTGGATGGAACTACTCTTGTGATATTTGGAGTGTAGGGTGCATACTTGTGGAGCTATGCTCGGGTGAGACTTTGTTTCAAACTCATGAAAACTTGGAACATCTTGCTATGATGGAAAGGGTATTAGGGCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGGTAATGAAACATGCAGACAACTCAGCAGGTCTATTTATAGATTTGTTGCAGGGGCTTCTCAATTATGAACCCTCAGAACGCTTGAAAGCTTCAGAGGCTTTGAGACATCCATTTTTCAGAGAAGGTTCGAGAAGATATGATTATAGTGCATATACTTCATAAAGTATGGATCTGACTATCTGTTAGTCTCAGATTTGTATTTGAGGTCCAGAGTCGCTGTGAATCATTGTACAATGCACATTGAGGAATTTCCTTCTCAACTCCGGACAGTTGTCTAGCTGTAATGTGTTATATTATGGATTCTTGGTGAAGGGTTTGGTATACCATTCAGCAGTGGTGTTTAGGCGAAATGAGTCCTTACATCATCAGCAGGCTTTTTGTACATTAGAGAGTTCGTTGAAAATTGCCGATATATTGCATATAATGAAATATGCATCTGAGAATTGTTCAGATATCGGTTGTCTATCGGTGAATCGTAGATTGTATTTGGGGGCCTGAGTTGCTGTGAATGATTACACTGCTGTTTGGAATTTCTTTCGCAGTTTCTGGAACGGCAGAGCAGAATCCATTGCAGTGCTCGTCTGTTGTTTGAGCGAAATGGATCCTCACATCAGAATACTTGTACATGCAGATGTATAATAATAATATATTTTTAAATTCATGAATGAATTCAATATGAAACTTTAAAAAGCATGAATGAATTCAAC

Fln Alignment:

sp_v1.1_unigene58973___TFGQVLECWDRKSKDLVAIKIVRGLQKYREAAMIEVDVLRKVGKYDRNGTRCVQMREWFDYRNHTCIVFEKLGPSLYDFLRKNNYSPFPIDLVREVGRQLLESVAYMHELKLVHTDLKPENILFVSSDSVKVPDCK-GVKGFPD---YFKRLPKSSAIKLIDFGSTTFEDQDHTSVVSTRHYRAPEVILGLGWNYSCDIWSVGCILVELCSGETLFQTHENLEHLAMMERVLGPLPHHMLKKSExxxxxxxxxxxxxxxxxxxxxxxxxxATSYVEKIRDLVMKHADNSAGLFIDLLQGLLNYEPSERLKASEALRHPFFREGSRRY
B8LL66_______________TFGQVLECWDRETREFVAVKIVRGLQRYREAAMIEIDVLREVAKYDRSGTRCVQMRNWFDYRNHVCIVFEKLGPSLYDFLRKNNYHPFPIDIVRELGKQLLESVAYMHHLHLIHTDLKPENILFASSEYKKVPYYKNGLKRLSQDGTCYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVILGLGWSYPADVWSIGCILVELCVGETLFQTHENMEHLAMMERVLGPFPQHLIRKADxxxxxxxxxxxxxxxxxxxxxxxxxxAVKKLPRLRNLVMERADHSAGALIDLLQGLLKYEPSERLEAQEALRHPFFTEDYRGF

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
479	9	4		85	0.999726
652		11		88	0.999937
675			12	87	0.999964
677			12	87	0.999964
678	86			13	0.999973
679	86		13		0.999973
681		13		86	0.999973
684	86	13			0.999973
686	13	86			0.999973
687	13			86	0.999973
689		86	13		0.999973
691		14	85		0.999981
695	14			85	0.999981
696		14		85	0.999981
718	87		12		0.992554
721		42		42	1.0
724	37		62		1.0
728	12		37	50	1.0
729		12		87	0.992559
730	11			88	0.923568
731			12	87	0.992555
732	12			87	0.992559
733			28	71	1.0
734		83		16	0.994512
740	83		16		0.994512
741		16		83	0.994512
742			83	16	0.994512
744			16	83	0.994512
746	16			83	0.994512
747			83	16	0.994512
748			83	16	0.994512
1270		66		33	0.997452
1282	33		66		0.997452
1288	25		75		0.996473
1293	25	75			0.996473
1296	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain