SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58972

Length: 1509 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58972

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=7 Tax=Pinaceae RepID=Q43021_PINBN	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	alcohol dehydrogenase	-	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0H5

Fln msg:

Fln protein: MASSTAGQVIKCKAAVAWAAGEPLKIEEVEVAPPQAMEVRIKIHYTALCHTDLYFWEAKGQTPLFPRILGHEAAGVVESVGEGVTDLKEGDTVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMISDGKSRFSINGKPIYHFVGTSTFSEYTVTHVGSLAKINPEAPLDKVCILSCGVSTGMGATLNVAKPKKGSSVAIFGLGGVGLAAAEGARIAGASRIIGIDLNSDRFEKAKLFGVTEFINPLDYKKPIQEVIAEKTDGGVDYSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATGPVNFLNERTLKGTFFGNYKPRSDLPGLVELYLSKKLELEKFITHEVSFADINKAFDYMIKGESLRCVINVIGH*

Protein Length: 384

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAATGCGAAAGTTTGTTTGTTCACCATCATACTACGATTGCAAAAGAAAATACCATCTGCGCAGAAAGGAAA_-_ATGGCGAGCTCTACTGCAGGTCAGGTTATCAAATGCAAAGCTGCTGTTGCATGGGCAGCAGGAGAGCCTTTGAAGATTGAAGAAGTGGAGGTGGCTCCCCCACAGGCAATGGAAGTCAGAATTAAAATTCATTATACTGCGTTGTGTCATACAGACCTTTATTTCTGGGAAGCAAAGGGCCAAACTCCTCTCTTTCCCCGCATCTTGGGACATGAAGCAGCTGGAGTTGTTGAGAGTGTTGGAGAAGGGGTGACTGACCTCAAGGAGGGTGACACTGTGCTTCCCGTATTTACTGGAGAATGTGGAGAATGCAGACATTGCAAATCAGAGGAGAGCAACATGTGCGATCTTCTGAGAATTAATACCGACAGAGGGGTTATGATAAGTGATGGGAAGTCTAGGTTTTCAATCAATGGGAAACCCATTTACCACTTCGTTGGTACATCGACTTTCAGCGAGTATACGGTTACGCATGTCGGTTCCCTTGCCAAAATTAATCCAGAGGCTCCTCTGGACAAAGTCTGTATTCTGAGTTGTGGGGTCTCAACAGGGATGGGGGCGACTTTGAATGTAGCCAAACCCAAGAAGGGTTCGTCAGTAGCAATATTTGGCCTTGGGGGAGTTGGGCTTGCCGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGACAGATTTGAAAAAGCAAAGCTATTTGGTGTAACGGAATTTATAAACCCACTGGACTACAAGAAGCCTATTCAAGAGGTTATTGCCGAGAAAACTGATGGAGGGGTGGACTACAGCATCGAGTGCACAGGGAATGTCAAGGCCATGATTCAAGCCTTCGAATCCTGCCATGATGGTTGGGGTGTAGCCGTTTTAGTGGGTGTCCCTCATTCAGACGCAGTCTTTGCAACCGGCCCTGTGAATTTTCTGAACGAAAGGACATTGAAAGGAACTTTTTTTGGAAACTATAAGCCCCGTTCCGATTTGCCAGGCCTTGTAGAATTGTATTTGTCCAAGAAGCTTGAACTGGAGAAATTTATTACACATGAGGTTTCATTTGCCGATATCAACAAGGCATTTGATTACATGATTAAAGGAGAGAGTTTGAGATGTGTGATTAACGTGATAGGTCATTAA___ATGGTATATAGGAAGTCCATAATAATATCTTCAAGTTTTCCGGAGTTTGTTACATATTGTGCGGTTAGGTTAATCGGCTTTATTCTTTAATACGTAGAGAGTGAGGTGTTCTGTATGGGATAAATAAAAGTGCTCGGAGAGCTATATTAAAACTTTAGAACTATATAGGAATTGTGATGGTTATATATAGGAATTGTGATGGTTATGAAGAATTTATATTGGGATTTTGTTATTCATTTTGAAAAGTCGTTATTGTTAATTT

Fln Alignment:

sp_v1.1_unigene58972___MASSTAGQVIKCKAAVAWAAGEPLKIEEVEVAPPQAMEVRIKIHYTALCHTDLYFWEAKGQTPLFPRILXXXXXXXXXXXXXXXTDLKEGDTVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMISDGKSRFSINGKPIYHFVGTSTFSEYTVTHVGSLAKINPEAPLDKVCILSCGVSTGMGATLNVAKPKKGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNSDRFEKAKLFGVTEFINPLDYKKPIQEVIAEKTDGGVDYSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATGPVNFLNERTLKGTFFGNYKPRSDLPGXXXXXXXXXXXXXXFITHEVSFADINKAFDYMIKGESLRCVINVIG
A9P0H5_______________MPSSTAGQVIKCKAAVAWGAGEPLKIEEVEVAPPQASEVRIKVHYTALCHTDLYFWEAKGQTPLFPRILGHEAAGIIESVGEGVTDLKVGDTVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFLGTSTFSEYTVAHVGCVAKINPEAPLDKVCILSCGVSTGMGATLNVAKPKKGSTVAIFGLGGVGLAAAEGARIAGASRIIGIDLNSDRFEKAKLFGVTEFINPKDHEKPIQEVIAERTDGGVDSSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATSPTHFLSERTLKGTFFGNYKPRSDLPGLVELYLDKKLELEKFITHEVSFANINKAFDYMIKGESLRCVINVIG

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
815	16		83		0.994512
863		14		85	0.993533
867	85	14			0.993533
882		16	83		0.994514
893		83		16	0.994519
944		75	12	12	0.975346
980		28		71	1.0
1002	75	25			0.996473
1005	33	33	33		0.997753
1008			33	66	0.997452
1010	33			66	0.997452
1013		66		33	0.997452
1015		66	33		0.997452
1016	66		33		0.997452
1017		33		66	0.997452
1019		66	33		0.997452
1020	66			33	0.997452
1021		33	66		0.997452
1024			66	33	0.997452
1026	66		33		0.997452
1039	33		66		0.997452
1107		33		66	0.997452
1108		66	33		0.997452
1109		66		33	0.997452
1113		33		66	0.997452
1117		66	33		0.997452
1119	66			33	0.997452
1121			66	33	0.997452
1123	33	66			0.997452
1124		33		66	0.997452
1127		33		66	0.997452
1206	90		10		0.90298
1208			10	90	0.90298
1214	90	10			0.90298
1216	90			10	0.90298
1219	90		10		0.90298
1220		10		90	0.90298
1222	90		10		0.90298
1223	90			10	0.90298
1224	90	10			0.90298
1225	10		90		0.90298
1226		10	90		0.90298
1227	90			10	0.90298
1228		10	90		0.90298
1257	66	33			1.0
1490	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain