SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58970

Length: 1484 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58970

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamyl alcohol dehydrogenase n=3 Tax=Rosaceae RepID=Q2Z1Z0_PRUMU	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cinnamyl alcohol dehydrogenase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPJ3

Fln msg:

Fln protein: MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL*

Protein Length: 327

Fln nts: CGTCGTGACCTTGGCTATGGGGATTGGGAAAGAGTTCTAGTGAAAACGTTGGGAAACAGAGTTCTAGTGCGGATTTGGTTCCAACTTTTATTCTCGTCATTAATCGTTCTCATTGTAGCCTACCTTTTTGTAAAACCCTCGTAACACACTTTGGTCTGATTATCCTATTCTCCGAAAACGCTTCGATCCTTGCTGTGATATCCAATTTCGATAACC_-_ATGAGCGGGAGACTAGTCTGCGTTACAGGAGCCTCGGGATTCATCGCGTCGTGGTTGGTGAAGTTGCTGCTGGATCGCGGTTATGTAGTTCGAGCTACCGTTCGTGATTTAGGTAATCCTGAGAAGACAAAGCACTTACATGTATTGGAAGGAGCAAAGGAAAGGCTTCAACTGGTGAAAGCAAATTTACTTGAGGAGGGAACATTTGATGCAGCTGTGGATGGCTGTGAAGGTGTCTTTCATACTGCATCACCATTTTACACTAGCGTCAAAGATCCCCAGGCTGAATTGCTTGATCCAGCAGTCAAGGGGACTATTAATGTTCTTAATGCATGTGCCAAAGCTTCTTCTGTGAAGAGGGTGATAGTGACCTCCTCTGTAGCAGCTGTTATATTCAATTCTAGGCCTCGATCACCTGGAGTAGTTGATGAAAGTTGGTTCAGTGATGCAGAGTACTGCAAGCAAACTAAGGCCTGGTATCAGCTATCAAAGACATTGGCAGAAGAAACTGCATGGAAATTTGCAAAGGAGAAGGGTATCGATGTTGTCACGATAAATCCAGCGATGGTGATTGGCACACTTTTACAGCCTACTCTGAATACAAGCTGTGCTGCAATTCTACAACTAATGAATGGGTCTTCAACATATCCTAATGCGACGTTTGGATGGGTCAGTGTAAAGGATGTAGCAAAGGCACATATTCTAGCATTTGAAGTTCCATCGGCAAATGGAAGATATCTTTTGGTTGAGAGGATTGCCCACTTCTCAGAAATTGTGAAGATCCTGAGCAAACTATATCCAGGATGCGCACTTCCAACAAAGTGTGCAGATGATAATCCCTTTGTCCCTACCTATACTGTCTCAAAAGAAAAGATAGAGAAGTTGGGTCTAAACTACACTCCTATTGAAGAGGCTCTCAGAGATACCGTTGAAAGCTTGAAGGAAAAGAAGCTGCTCAACTTAGATAGCAATCTGTGA___TTTGCTTAAACCTGGAATTCCTTTTTCTTTTAAATATGTGGTTATGCTACTTAGCTTTTATTTAAAATTCTGTTGAAAATTAGATTCATCTTCTATCAAACACGGAAATGTCCTTGAAAGTCAGACATGTTCTTTACCTATTTTATTTTTGGATCATTTTTGAAAACATTTAGGATGAATGTAACTTCATTATTCTTAGCTGTTATAATTATTGGGCAACTGTTGAAGTATATCAATATAGATGTAGTGTGTAGAGACCAAAAAACATATGTTGATGGAGTTTTACTGGC

Fln Alignment:

sp_v1.1_unigene58970___MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL
A9NPJ3_______________MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASPFYIGIKDPQAEMLDPAVKGTINVLNACAKASSVKRVVVTSSVASVIFNSRPRSPGVVDETWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDIVTINPAMVIGTLLQPSLNTSCAAILQLMNGSSTYPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHCSEIVKILSKLYPGCTLPTKCADDNPFVPTYTVSKERIEKLGLKYTPIEEALRDTVESLKEKKLLNLDSNV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
876		92		7	0.999602
877	92		7		0.999602
878	92		7		0.999602
879		92	7		0.999602
1074	95			4	0.995482
1240		33		66	1.0
1244		65		35	1.0
1250		90		10	0.90298
1251		10		90	0.90298
1403		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain